View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681-Insertion-5 (Length: 576)

Name: NF1681-Insertion-5
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681-Insertion-5
NF1681-Insertion-5
[»] chr5 (3 HSPs)
chr5 (7-374)||(12633840-12634207)
chr5 (478-576)||(12633553-12633651)
chr5 (373-442)||(12633686-12633755)
[»] chr2 (1 HSPs)
chr2 (50-301)||(28050064-28050315)
[»] chr1 (1 HSPs)
chr1 (50-301)||(19851758-19852009)
[»] scaffold0534 (1 HSPs)
scaffold0534 (50-301)||(9319-9570)
[»] chr8 (2 HSPs)
chr8 (50-301)||(17231342-17231593)
chr8 (479-572)||(31151209-31151300)
[»] chr7 (5 HSPs)
chr7 (250-374)||(37960681-37960805)
chr7 (478-576)||(37960988-37961086)
chr7 (373-442)||(37960883-37960952)
chr7 (50-157)||(37960519-37960617)
chr7 (203-239)||(37960626-37960662)
[»] scaffold0599 (1 HSPs)
scaffold0599 (23-133)||(3469-3577)
[»] chr3 (1 HSPs)
chr3 (23-133)||(11911775-11911883)
[»] scaffold0042 (1 HSPs)
scaffold0042 (21-85)||(11068-11132)


Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 12634207 - 12633840
Alignment:
Q  7 agtttactctatcaagtaaacaacatatctttcctatactctttatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||    
T  12634207 agtttactctatcaagtaaacaacatatctttcctatactctttatctttcgaacaattattatgtatacttattaatgagtgtcttagaatttgagttg 12634108  T
Q  107 agtctaattcatgaagttagtagttaccatatattgggcatatctagtaataatattttatatttgaacactgattaatagctctttgtagacattaaat 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12634107 agtctaattcatgaagttagtagttaccatatatcgggcatatctagtaataatattttatatttgaacactgattaatagttctttgtagacattaaat 12634008  T
Q  207 ttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgtaatttgttgcagggggttagacaagaacaagagagaggagaaactcatgggaatttt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12634007 ttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgtaatttgttgcagggggttagacaagaacaagagagaggagaaactcatgggaatttt 12633908  T
Q  307 gctgacaacccttgatcaccttggcctccaaatgtttacgcatcagaaccaggaaaattctcattatt 374  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||| ||||||||    
T  12633907 gctgacaacccttgattaccttggcctccaaatgtttatgcatcaaaactaggaaaattatcattatt 12633840  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 478 - 576
Target Start/End: Complemental strand, 12633651 - 12633553
Alignment:
Q  478 gatcagtggaaaaagtggttctcaagctggcactatgaaggaaatagatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctgga 576  Q
    ||||||||| ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12633651 gatcagtggcaaaggtggttctcaagctggcactatgaaggaaacaaatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctgga 12633553  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 12633755 - 12633686
Alignment:
Q  373 ttgaacacagttagagccaagtttcagttaaacgaaacatgtaaaagaacggcaaatgagaagaacttta 442  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||| | |||||  |||||||||||    
T  12633755 ttgaacacaactagagccaagtttcagttaaatgaaacatgtaaaagaatgacaaataggaagaacttta 12633686  T

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Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 28050064 - 28050315
Alignment:
Q  50 tatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatattgggcatat 149  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  28050064 tatctttctaacaattattgtgtatgcttattaatgcgtgtcttaaaatttgagttgtgtctaattcatgaagttagtagttaccatatatctggcatat 28050163  T
Q  150 ctagtaataatattttatatttgaacactgattaatagctctttgtagacattaaatttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgt 249  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  28050164 ctagtaataatattttatatttgaacattggttaatagctctctgtagacgttaaatttcatcactgatgcaacaaaatatgttttagatatgcatgtgt 28050263  T
Q  250 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatggga 301  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  28050264 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggga 28050315  T

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Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 19851758 - 19852009
Alignment:
Q  50 tatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatattgggcatat 149  Q
    |||||||| ||||||||| | |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  19851758 tatctttctaacaattattgtgtatgcttattaatgtgtgtcttaaaatttgagttgagtctaattcatgaagttagtagttaccatatatctggcatat 19851857  T
Q  150 ctagtaataatattttatatttgaacactgattaatagctctttgtagacattaaatttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgt 249  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  19851858 ctagtaataatattttatatttgaacattggttaatagctctctgtagacgttaaatttcatcactgatgcaacaaaatatgttttagatatgcatgtgt 19851957  T
Q  250 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatggga 301  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  19851958 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggga 19852009  T

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Target: scaffold0534 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 9319 - 9570
Alignment:
Q  50 tatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatattgggcatat 149  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  9319 tatctttctaacaattattgtgtatgcttattaatgcgtgtcttaaaatttgagttgtgtctaattcatgaagttagtagttaccatatatctggcatat 9418  T
Q  150 ctagtaataatattttatatttgaacactgattaatagctctttgtagacattaaatttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgt 249  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  9419 ctagtaataatattttatatttgaacattggttaatagctctctgtagacgttaaatttcatcactgatgcaacaaaatatgttttagatatgcatgtgt 9518  T
Q  250 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatggga 301  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||||    
T  9519 aatttgttgcagggggctagacgagaacaagagagaggaaaaactcatggga 9570  T

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Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 50 - 301
Target Start/End: Original strand, 17231342 - 17231593
Alignment:
Q  50 tatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatattgggcatat 149  Q
    |||||||| ||||||||| | |||| |||||||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||   ||||||    
T  17231342 tatctttctaacaattattgtgtatgcttattaatgtgtgtcttaaaatttgagttgtgtctaattcaagaagttagtagttaccatatatctagcatat 17231441  T
Q  150 ctagtaataatattttatatttgaacactgattaatagctctttgtagacattaaatttcaccactgatgcaacaaaatgtgttttaaatatgcatgtgt 249  Q
    ||||||||||||||||||||||||||| || ||||||||||| ||| ||| |||||||||| | ||||||||||||||| ||||||| ||||||||||||    
T  17231442 ctagtaataatattttatatttgaacattggttaatagctctctgttgacgttaaatttcatcgctgatgcaacaaaatatgttttagatatgcatgtgt 17231541  T
Q  250 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatggga 301  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  17231542 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggga 17231593  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 479 - 572
Target Start/End: Complemental strand, 31151300 - 31151209
Alignment:
Q  479 atcagtggaaaaagtggttctcaagctggcactatgaaggaaatagatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgc 572  Q
    |||||||| ||| |||||||||||  |||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||    
T  31151300 atcagtggcaaaggtggttctcaa--tggcacgatgaaggaaacaaatccaaaagagaagctgaattacttgtggaaatcataaatttaaccgc 31151209  T

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Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 37960681 - 37960805
Alignment:
Q  250 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatgggaattttgctgacaacccttgatcaccttggcctccaaatgtttacgcat 349  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| | ||    
T  37960681 aatttgttgcagggtgatagacaagaacaagagagaggagaaactcatggggattttgctgacaacccttgatgaccttgacctccaaatgtttaggaat 37960780  T
Q  350 cagaaccaggaaaattctcattatt 374  Q
    |||||||||||||||||||||||||    
T  37960781 cagaaccaggaaaattctcattatt 37960805  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 478 - 576
Target Start/End: Original strand, 37960988 - 37961086
Alignment:
Q  478 gatcagtggaaaaagtggttctcaagctggcactatgaaggaaatagatccaaaagagaagctgaattacttgtgcaaatcataaatttaaccgctgga 576  Q
    ||||||||| ||| |||||| |||||||||  | |||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37960988 gatcagtggcaaaggtggttttcaagctgggtcaatgaaggaaacaaatccaaaagagaagctaaattacttgtgcaaatcataaatttaaccgctgga 37961086  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 442
Target Start/End: Original strand, 37960883 - 37960952
Alignment:
Q  373 ttgaacacagttagagccaagtttcagttaaacgaaacatgtaaaagaacggcaaatgagaagaacttta 442  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||   ||||||||||    
T  37960883 ttgaacactgctagagccaagtttcagttaaatgaaacatgtaaaagaatggcaaatagaaagaacttta 37960952  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 37960519 - 37960617
Alignment:
Q  50 tatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatattgggcatat 149  Q
    |||||||| ||| ||||| | ||||||||||||||| |||||||| ||         ||||||||||||||| ||||||||||||||||||   ||||||    
T  37960519 tatctttctaactattattgtgtatacttattaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagttaccatatatcaagcatat 37960609  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 37960626 - 37960662
Alignment:
Q  203 aaatttcaccactgatgcaacaaaatgtgttttaaat 239  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37960626 aaatttaaccactgatgcaacaaaatgtgttttaaat 37960662  T

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Target: scaffold0599 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 3469 - 3577
Alignment:
Q  23 taaacaacatatctttcctatactctttatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaag 122  Q
    ||||||||||||||||| ||| || |||||||||| ||||||||| | |||| ||||||||||  ||||||| ||||||| |||||||||||||||||||    
T  3469 taaacaacatatctttcatattctatttatctttctaacaattattgtgtatgcttattaatg--tgtcttaaaatttgaattgagtctaattcatgaag 3566  T
Q  123 ttagtagttac 133  Q
    |||||||||||    
T  3567 ttagtagttac 3577  T

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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 11911775 - 11911883
Alignment:
Q  23 taaacaacatatctttcctatactctttatctttcgaacaattatcgcgtatacttattaatgcgtgtcttagaatttgagttgagtctaattcatgaag 122  Q
    ||||||||||||||||| ||| || |||||||||| ||||||||| | |||| ||||||||||  ||||||| ||||||| |||||||||||||||||||    
T  11911775 taaacaacatatctttcatattctatttatctttctaacaattattgtgtatgcttattaatg--tgtcttaaaatttgaattgagtctaattcatgaag 11911872  T
Q  123 ttagtagttac 133  Q
    |||||||||||    
T  11911873 ttagtagttac 11911883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 11132 - 11068
Alignment:
Q  21 agtaaacaacatatctttcctatactctttatctttcgaacaattatcgcgtatacttattaatg 85  Q
    ||||||||||||||||||| |||||| |||||||||| ||||||||| | |||  ||||||||||    
T  11132 agtaaacaacatatctttcatatactatttatctttctaacaattattgtgtacgcttattaatg 11068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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