View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681-Insertion-7 (Length: 854)
Name: NF1681-Insertion-7
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-7 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 779; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 8 - 846
Target Start/End: Complemental strand, 28609273 - 28608435
Alignment:
| Q |
8 |
aactacgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609273 |
aactatgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatca |
28609174 |
T |
|
| Q |
108 |
ttgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctt |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28609173 |
ttgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatagataatatgccccttgctt |
28609074 |
T |
|
| Q |
208 |
tatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609073 |
tatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgac |
28608974 |
T |
|
| Q |
308 |
agctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatccc |
407 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608973 |
agataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatccc |
28608874 |
T |
|
| Q |
408 |
accgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatg |
507 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608873 |
acagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatg |
28608774 |
T |
|
| Q |
508 |
gaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608773 |
gaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgtttctactctgat |
28608674 |
T |
|
| Q |
608 |
agcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
28608673 |
agcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggc |
28608574 |
T |
|
| Q |
708 |
ttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaggtctagtggcattgaaag |
807 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28608573 |
ttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaag |
28608474 |
T |
|
| Q |
808 |
attcaatgaggctaataacccctacagccagacgagtat |
846 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28608473 |
attcaatgaggctaataacccctacagcttgacgagtat |
28608435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 33 - 846
Target Start/End: Original strand, 437656 - 438469
Alignment:
| Q |
33 |
ttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatcattgctgttcatcgttgtcaatctaa |
132 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
437656 |
ttttctagttcattgagggttgtgggaatatcttcacctgaatggacattaacttctgaataagatatagaatcattgttgttcatcgctgtcaatctaa |
437755 |
T |
|
| Q |
133 |
atccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctttatcatgacttgtggtgtccactat |
232 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||| ||| || || || | ||||||||| |||||| ||||| |
|
|
| T |
437756 |
atccattcacatactcatcatctaactccttctgcttctcactatccattacaatagatagtatcccttgtggttcagcatgacttgaggtgtctactat |
437855 |
T |
|
| Q |
233 |
tgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcagga |
332 |
Q |
| |
|
| |||| ||| |||||| |||||||||||||||| | ||||||||||| | |||||| ||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
437856 |
ttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagctaaggcttcgcgatcatcagga |
437955 |
T |
|
| Q |
333 |
cctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatca |
432 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
437956 |
ccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccacagagcaaggtgcactttgcatca |
438055 |
T |
|
| Q |
433 |
cattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgttt |
532 |
Q |
| |
|
|||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
438056 |
cattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaaggagaatcaaacttgtacattt |
438155 |
T |
|
| Q |
533 |
ttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgct |
632 |
Q |
| |
|
||| ||| | | |||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| |||| |
|
|
| T |
438156 |
ttcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgct |
438255 |
T |
|
| Q |
633 |
tcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactg |
732 |
Q |
| |
|
||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||| | |
|
|
| T |
438256 |
tcaaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaaggg |
438355 |
T |
|
| Q |
733 |
caccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaggtctagtggcattgaaagattcaatgaggctaataacccctac |
832 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
438356 |
caccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctac |
438455 |
T |
|
| Q |
833 |
agccagacgagtat |
846 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
438456 |
ggcctgacgagtat |
438469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 8 - 830
Target Start/End: Complemental strand, 13660644 - 13659822
Alignment:
| Q |
8 |
aactacgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatca |
107 |
Q |
| |
|
||||| ||||||||| |||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||| || ||||| |||||||||||| |
|
|
| T |
13660644 |
aactatgtataaatcataaccaaatttgtctaaatcattgaggattgtgggaatatcttcacttgaatggacatcaacctccgaatatgatatagaatca |
13660545 |
T |
|
| Q |
108 |
ttgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctt |
207 |
Q |
| |
|
||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |||||||||| | |||||||||||| | ||| |
|
|
| T |
13660544 |
ttgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatatgccttgtactt |
13660445 |
T |
|
| Q |
208 |
tatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgac |
307 |
Q |
| |
|
|| ||||||| | | | ||| || |||| ||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| || |
|
|
| T |
13660444 |
cataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaac |
13660345 |
T |
|
| Q |
308 |
agctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatccc |
407 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||| |
|
|
| T |
13660344 |
agctaaggcttcatgatcatcaggacctccaataaagatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattccc |
13660245 |
T |
|
| Q |
408 |
accgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatg |
507 |
Q |
| |
|
|| |||||||||| | |||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||| |
|
|
| T |
13660244 |
acagagcaaggtgaagtttgcatcacattctggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatg |
13660145 |
T |
|
| Q |
508 |
gaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgat |
607 |
Q |
| |
|
|||| | ||||| |||||| ||||||| ||| | | || |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| |
|
|
| T |
13660144 |
gaagtataatcatgcttgtgcgtttttcattagcagagttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgac |
13660045 |
T |
|
| Q |
608 |
agcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggc |
707 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||| |
|
|
| T |
13660044 |
agcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggc |
13659945 |
T |
|
| Q |
708 |
ttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaggtctagtggcattgaaag |
807 |
Q |
| |
|
|| |||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||| |||| ||| ||||||||| |||||| |||||||||| |
|
|
| T |
13659944 |
ttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaag |
13659845 |
T |
|
| Q |
808 |
attcaatgaggctaataacccct |
830 |
Q |
| |
|
|||||| |||||| ||||||||| |
|
|
| T |
13659844 |
attcaacgaggctgataacccct |
13659822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 831
Target Start/End: Complemental strand, 13653144 - 13652321
Alignment:
| Q |
8 |
aactacgtataaatcgcaaccaattttttctatctcattgagggatgtgggaatatcttcagcagaatggacatcaacttctgaataagatatagaatca |
107 |
Q |
| |
|
||||| ||||||||| ||||||| ||| |||| |||| ||| |||||||||||||||| | |||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
13653144 |
aactatgtataaatcacaaccaaatttgtctaaatcatcaaggattgtgggaatatcttcacctgaatggacatcaacctctgaataggatataaaatca |
13653045 |
T |
|
| Q |
108 |
ttgctgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgtttctcactatccattaccatagataatatgccccttgctt |
207 |
Q |
| |
|
||| | |||| | | ||| ||||||| ||| ||||| || || |||| ||||| || |||||| |||||||||| | |||||||| || || || |
|
|
| T |
13653044 |
ttgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacagataatactccttgtgttt |
13652945 |
T |
|
| Q |
208 |
tatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgac |
307 |
Q |
| |
|
|| ||||||| | ||||| ||| |||||| | | |||| |||||| ||||||||| | | | |||| | ||| | | |||||||||||| || |
|
|
| T |
13652944 |
cattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctccgccatcctccatgcaac |
13652845 |
T |
|
| Q |
308 |
agctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatccc |
407 |
Q |
| |
|
|| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||||||||||| | |||| |
|
|
| T |
13652844 |
agttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacgatcaacaaagattccc |
13652745 |
T |
|
| Q |
408 |
accgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatg |
507 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||| |
|
|
| T |
13652744 |
acagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatg |
13652645 |
T |
|
| Q |
508 |
gaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgat |
607 |
Q |
| |
|
|||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| ||| ||||| | |
|
|
| T |
13652644 |
gaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaaggttcggactctaac |
13652545 |
T |
|
| Q |
608 |
agcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggc |
707 |
Q |
| |
|
|||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || || ||| |||||||| |
|
|
| T |
13652544 |
agcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccaggttgcacactaggc |
13652445 |
T |
|
| Q |
708 |
ttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaggtctagtggcattgaaag |
807 |
Q |
| |
|
|| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
13652444 |
ttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattctagtggcattgaaag |
13652345 |
T |
|
| Q |
808 |
attcaatgaggctaataaccccta |
831 |
Q |
| |
|
| | ||||||| | |||||||||| |
|
|
| T |
13652344 |
actgaatgaggttgataaccccta |
13652321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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