View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681-Insertion-8 (Length: 789)
Name: NF1681-Insertion-8
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-8 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 685; Significance: 0; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 8 - 786
Target Start/End: Complemental strand, 23018865 - 23018084
Alignment:
| Q |
8 |
caataatgtctcgattgtatatcatatcatatgtatataaaccacaaaatggtagcacataatacataatactatctttctttaccatggctctactagt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23018865 |
caataatgtctcgattgtatatcatatcatatgtatataaaccacaaaatagtagcacataatacataatactatctttcttttccatggctctactagc |
23018766 |
T |
|
| Q |
108 |
cctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcnnnnnnncagactcaacttttaacctccca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23018765 |
cctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcaaaaaaacagactcaacttttaacctccca |
23018666 |
T |
|
| Q |
208 |
aaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggaccct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018665 |
aaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggaccct |
23018566 |
T |
|
| Q |
308 |
tgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018565 |
tgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaag |
23018466 |
T |
|
| Q |
408 |
gcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcacgtaaaatttgcaca |
507 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018465 |
gcctaaagtcctagctatcgatataatgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcacgtaaaatttgcaca |
23018366 |
T |
|
| Q |
508 |
tcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgcttcggagaatggattgc |
607 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
23018365 |
ttggagcttttaagcctaaaaagggtcaactcataccaaccgattagagaagaggttttctccaatcttatcaagtcgattgcttcagagaatggatcgc |
23018266 |
T |
|
| Q |
608 |
caatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcatt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23018265 |
caatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagt |
23018166 |
T |
|
| Q |
708 |
ggtaaaagaatctacaaagattgcagca-gttttgacttgggagatt-gtttccttc-tctaaatggcttcaatatgttacc |
786 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
23018165 |
ggtaaaagaatctgtaaagattgcagcaggttttgacttgggagattcgtttccttcttctaaatggcttcaatatgttacc |
23018084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 92 - 753
Target Start/End: Complemental strand, 23040566 - 23039910
Alignment:
| Q |
92 |
ccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcnnnnnnncagactc |
191 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| || |||| |||||||| ||||||| ||| |||| |
|
|
| T |
23040566 |
ccatggctctactaatcctctacttgccatatattttctcctttatcctcttaacccttgtagtacaaaagataggaaacaagaaaagtt------actc |
23040473 |
T |
|
| Q |
192 |
aacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggcc |
291 |
Q |
| |
|
|||| |||| | ||| |||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
23040472 |
gacttataacataccaccagggcctataaagttacctattataggaaatatacacaatctgttaacctctcaaccccatcgaaaactaagagacttggcc |
23040373 |
T |
|
| Q |
292 |
aaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgata |
391 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||| | |||| ||| ||||| |||||||||||||||| |
|
|
| T |
23040372 |
aaaaaatatggacccctgatgcatcttcaacttggagaggtttctgctatggtcatttcatcgcccgagtgtgctggcgaggtaatgaaaacccatgata |
23040273 |
T |
|
| Q |
392 |
ttcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggc |
491 |
Q |
| |
|
||||||||||| |||||||| || |||| |||| |||||| ||||||||||||| |||| ||| ||||| |||| |||||| |||||||||||||| |
|
|
| T |
23040272 |
ttcactttgcatcaaggcctcaaatcctggctacagaaataatgtcttacaattctacaaatatagcttttgctccgtatggtaattattggagacagct |
23040173 |
T |
|
| Q |
492 |
acgtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgct |
591 |
Q |
| |
|
||| ||||||||||||| |||||||| |||||||||||||| |||||||| ||||| ||||||||| | || || ||||||||| |||| | ||||||| |
|
|
| T |
23040172 |
acggaaaatttgcacattggagcttttgagcctaaaaagggttaactcatatcaaccaattagagaagaagtgttttccaatcttgtcaaatggattgct |
23040073 |
T |
|
| Q |
592 |
tcggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaag |
691 |
Q |
| |
|
|| | | ||| | ||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
23040072 |
tcacgggacggaattccaatcaacattactgaagctgtacgttcttcaatatacacaattgtttcaagggctgcctttggcaatgaatgcaaggaccaag |
23039973 |
T |
|
| Q |
692 |
aaaaatttatatcattggtaaaagaatctacaaagattg-cagcagttttgacttgggagatt |
753 |
Q |
| |
|
| |||||||||||| |||||||| |||| | |||| ||| | | |||||||||||||||||| |
|
|
| T |
23039972 |
acaaatttatatcagtggtaaaacaatcaataaaggttgccgggggttttgacttgggagatt |
23039910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 291 - 785
Target Start/End: Complemental strand, 23034179 - 23033682
Alignment:
| Q |
291 |
caaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgat |
390 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||| |
|
|
| T |
23034179 |
caaacaatatggatccttgatgcatcttcaacttggagaggtttctactattgtcatttcatccactgagtttgctagggaggtgatgaaaacccatgat |
23034080 |
T |
|
| Q |
391 |
attcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacagg |
490 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| |||||| |||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
23034079 |
attcactttgcaacaaggcctcaaatcctagctacagaaataatgtcttacaactccacaaatatagctttttctccgtatggtaattattggagacagt |
23033980 |
T |
|
| Q |
491 |
cacgtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgc |
590 |
Q |
| |
|
||| ||||| ||||||| |||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
23033979 |
tacgaaaaatctgcacattggagcttttaagccttaaaagggtcaactcgtaccaaccaatacgagaagaggttttctccaatcttgtcaaaacgattgc |
23033880 |
T |
|
| Q |
591 |
ttcggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaa |
690 |
Q |
| |
|
|||| ||||||||| || ||||| | |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
23033879 |
ttcgcagaatggatcacccttcaaccttactgaagctgtaatttcttcaatatacacaattgtttcaagggccgcctttggcaatgaatgcagagaccaa |
23033780 |
T |
|
| Q |
691 |
gaaaaatttatatcattggtaaaagaatctacaaagattgcagca-gttttgacttgggaga-ttgtttccttc-tctaaatggcttcaatatgttac |
785 |
Q |
| |
|
|||||||||||||| |||||||| || | ||||||||||| | ||||| |||||||||| ||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
23033779 |
gaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttac |
23033682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 82 - 705
Target Start/End: Complemental strand, 23025805 - 23025185
Alignment:
| Q |
82 |
tctttctttaccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcnnnn |
181 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23025805 |
tctttcttttccatggctttactagtcctctacttgtcatatattttcttctttattctcttagccattgttgtacaaaaagtaggaaagaagctcaaga |
23025706 |
T |
|
| Q |
182 |
nnncagactcaacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaag |
281 |
Q |
| |
|
||||| | |||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||| || | |
|
|
| T |
23025705 |
acacagaccc---ttttaacctccctaatggacctagaaagctaccaattataggaaatatacacaatctgttaagctctcaaccacatcgaaaactacg |
23025609 |
T |
|
| Q |
282 |
tgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaa |
381 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| | || | ||| | |||||| |||||| |
|
|
| T |
23025608 |
agacttggcaagagaatatggacccttgatgcatctccaacttggagagatttcctttattgtcatttcatcaccagactgtgctagggaggtgatgaaa |
23025509 |
T |
|
| Q |
382 |
acccatgatattcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattatt |
481 |
Q |
| |
|
|| ||||||||| |||||||||| |||||| ||| |||| || || || | |||||||||||||| |||| || ||||||||||||| |||||| |
|
|
| T |
23025508 |
actcatgatattaactttgcaaccaggcctcaaggcctatcttcagatttaattgcttacaattccacaggtatagtttcttctccttatggtaattatt |
23025409 |
T |
|
| Q |
482 |
ggagacaggcacgtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaa |
581 |
Q |
| |
|
|||||||| | | ||||||||||||| |||||||| ||||||||| | |||||||| ||||| |||||||||||| | | |||||||||||| |||| |
|
|
| T |
23025408 |
ggagacagttaagaaaaatttgcacattggagcttttgagcctaaaacgcgtcaactcctaccagccgattagagaagaagagttctccaatcttgtcaa |
23025309 |
T |
|
| Q |
582 |
gtcgattgcttcggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgc |
681 |
Q |
| |
|
| |||||||||| || | |||| || |||||| ||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||| |||| | |
|
|
| T |
23025308 |
atggattgcttcgaaggaaggatcacccatcaacctcactcaagctgtactttcttcaatatacactattgtttcaaaatctgcctttggcaagaaattc |
23025209 |
T |
|
| Q |
682 |
aaagaccaagaaaaatttatatca |
705 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23025208 |
aaagaccaagaaaaatttatatca |
23025185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 211 - 753
Target Start/End: Complemental strand, 23147328 - 23146785
Alignment:
| Q |
211 |
gggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttga |
310 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
23147328 |
gggcctagaaagttaccaattataggaaatatacacaatctgttaagctctcaaccccatcaaaaattaagagacttggcgaaaaaatatggaccagtga |
23147229 |
T |
|
| Q |
311 |
tgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaaggcc |
410 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||||| | |||| ||| | ||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
23147228 |
tgcatcttcaacttggagaggtttctgctatggtcatttcatcccccgagtgtgctagtgaggtgatgaaaacccatgatattcacttttcatcaaggcc |
23147129 |
T |
|
| Q |
411 |
taaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcacgtaaaatttgcacatca |
510 |
Q |
| |
|
| || |||| |||| |||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||| ||||| |||||| |
|
|
| T |
23147128 |
tcaaatcctggctacagaaataatgtcttacaattccacaagtatagcttttgctccttatggtaattattggagacagctacggaaaatctgcacactg |
23147029 |
T |
|
| Q |
511 |
gagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgcttcggagaatggattgccaa |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| | || || | ||||||| ||| | |||||| || || ||| | |||| |
|
|
| T |
23147028 |
gagcttttaagcctaaaaagggtcaactcataccaaccaattagagaagaagtgtttttcaatcttgccaaatggattgcctcacaggtcggaattccaa |
23146929 |
T |
|
| Q |
611 |
tcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcattggt |
710 |
Q |
| |
|
||||| | ||||||||||||| ||| || ||||||||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
23146928 |
tcaacattactgaagctgtacgttcgtcaatatacacaattgtttcgagggctgcttttggcaatgaatgcaaagaccaagataaatttatatcagtggt |
23146829 |
T |
|
| Q |
711 |
aaaagaatctacaaagattgca-gcagttttgacttgggagatt |
753 |
Q |
| |
|
|||| |||| | |||| ||||| | |||||||||||||||||| |
|
|
| T |
23146828 |
aaaacaatcaataaaggttgcagggggttttgacttgggagatt |
23146785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 57 - 762
Target Start/End: Complemental strand, 23141833 - 23141123
Alignment:
| Q |
57 |
tggtagcacataatacataatacta---tctttctttaccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgtt |
153 |
Q |
| |
|
||||||||||| | ||||||||| | ||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
23141833 |
tggtagcacatgacacataatacaactttctttcttttccatggctctactagtcatctacttgtcatatattttctcctttgtcctcttagcccttatt |
23141734 |
T |
|
| Q |
154 |
gtacaaaaagtaggaaagaagctcnnnnnnncagactcaacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttc |
253 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
23141733 |
ctacaaaaagtagaaaagaagttcaagaacacagactcaacttttaacctccctaaagggcctataaagctacctattataggaaatttacacaatctgt |
23141634 |
T |
|
| Q |
254 |
taagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatc |
353 |
Q |
| |
|
|||| |||||||| |||| |||| |||| || ||||| | |||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||| |
|
|
| T |
23141633 |
taagttctcaaccacataaaaaactaagagatttggctagaaaatatggacccttgatgcatcttcaacttggagagatttccatgattgtaatttcatc |
23141534 |
T |
|
| Q |
354 |
agctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagt |
453 |
Q |
| |
|
| |||| | ||| | |||||| |||||||| ||||||||| ||||||||| ||||||||||||||||||| || || | ||||| ||||||||| | |
|
|
| T |
23141533 |
acctgattgtgctagggaggtgatgaaaactcatgatattaactttgcaataaggcctaaagtcctagcttcagatttaatttcttataattccacaggc |
23141434 |
T |
|
| Q |
454 |
atctctttttctccttatggtgattattggagacaggcacgtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgatta |
553 |
Q |
| |
|
|| || |||||||||||| |||||||||||||| | | |||||||| | || |||||||| ||||||||| | |||||||||||||| || |||| |
|
|
| T |
23141433 |
ataatttcatctccttatggtaattattggagacagctaagaaaaatttgtgcctcggagcttttgagcctaaaacgcgtcaactcataccagccaatta |
23141334 |
T |
|
| Q |
554 |
gagaaaaggttttctccaatcttatcaagtcgattgcttcggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgt |
653 |
Q |
| |
|
||||| | | |||||||||||| |||| | ||| |||| |||| |||| | |||||| ||||| |||||||||||||||| |||||||| ||| | |
|
|
| T |
23141333 |
gagaagaagagttctccaatcttgtcaaatggataacttcaaagaaaggatcatccatcaacctcactcaagctgtactttcttcaatatacactattct |
23141234 |
T |
|
| Q |
654 |
ttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcattggtaaaagaatctacaaagattgcagca-gttttgacttgggaga- |
751 |
Q |
| |
|
||||| |||| |||||||| || ||||| |||||||| |||||||||||| |||||||| | | ||||||||||||| |||||||||| | ||| |
|
|
| T |
23141233 |
ttcaaaatctgcatttggcaagaagtgcaacgaccaagacaaatttatatcagcagtaaaagagttaataaagattgcagcaggttttgacttagaagac |
23141134 |
T |
|
| Q |
752 |
ttgtttccttc |
762 |
Q |
| |
|
||||||||||| |
|
|
| T |
23141133 |
ttgtttccttc |
23141123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 210 - 712
Target Start/End: Complemental strand, 23037577 - 23037075
Alignment:
| Q |
210 |
agggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttg |
309 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |
|
|
| T |
23037577 |
agggcctataaagttacctattataggaaatatacacaatctgttaagctctcaaccccataggaaattaagagacttggccaaaaaatatggaccagtg |
23037478 |
T |
|
| Q |
310 |
atgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaaggc |
409 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| |||||||| ||| | |||| ||| | ||||| |||||||| ||||||||||||||| || |||||| |
|
|
| T |
23037477 |
atgcatcttcaacttggagaggtttctaatatggtcatttcgtcacccgagtgtgccagcgaggtgatgaaaactcatgatattcacttttcatcaaggc |
23037378 |
T |
|
| Q |
410 |
ctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcacgtaaaatttgcacatc |
509 |
Q |
| |
|
|| || | |||| | |||||| | |||||||||||||||||||| ||||| |||| || ||| |||||||||||||| ||| ||||| ||||| | |
|
|
| T |
23037377 |
ctcaaatactagtaacagaaataatctcttacaattccacaagtatagcttttgctccgtacggtaattattggagacagatacgaaaaatctgcacgtt |
23037278 |
T |
|
| Q |
510 |
agagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgcttcggagaatggattgcca |
609 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||| | || | ||||||||| |||| | ||||||||| |||| ||| ||| |
|
|
| T |
23037277 |
ggagcttttaagcctgaaaagggttaactcataccaaccgattagagaagaagtgctttccaatcttgtcaaatggattgcttcacagaaaggaactcca |
23037178 |
T |
|
| Q |
610 |
atcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcattgg |
709 |
Q |
| |
|
||||| || |||||||||||||||| | || |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23037177 |
atcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattgg |
23037078 |
T |
|
| Q |
710 |
taa |
712 |
Q |
| |
|
||| |
|
|
| T |
23037077 |
taa |
23037075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 94 - 705
Target Start/End: Complemental strand, 23150403 - 23149792
Alignment:
| Q |
94 |
atggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcnnnnnnncagactcaa |
193 |
Q |
| |
|
||||||||| |||| ||||| |||| ||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||| |||| |
|
|
| T |
23150403 |
atggctctagaagtcatctacctgtcttatcttttctcctttgttctcttagcccttgttttacaaaaagtaggaaagaagctcaagaaaacagattcaa |
23150304 |
T |
|
| Q |
194 |
cttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaa |
293 |
Q |
| |
|
||| ||||||||| |||||||||| ||||||||| ||||| |||||| |||||||||| |||| |||||||| ||| |||| |||| || ||||| | |
|
|
| T |
23150303 |
cttataacctccctaaagggcctataaagctaccaattattggaaatttacacaatctgttaagttctcaaccacatcaaaaactaagagatttggctag |
23150204 |
T |
|
| Q |
294 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||| | |||| ||||||||| |||| | ||| | |||||| |||||||| ||||| ||| |
|
|
| T |
23150203 |
aaaatatggacccttgatgcatcttcaacttggacagatttccatggttgtaatttcatcatctgactgtgctagggaggtgatgaaaactcatgacatt |
23150104 |
T |
|
| Q |
394 |
cactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcac |
493 |
Q |
| |
|
||||||||| ||||||| | |||||| | ||| | ||||| ||||| ||| |||| ||| | || ||| |||| |||||||||||||| | |
|
|
| T |
23150103 |
aactttgcaataaggcctccatcgctagcttcggtgataatttcttataattctacaggtatagcttctgcttcttgtggtaattattggagacagctaa |
23150004 |
T |
|
| Q |
494 |
gtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgcttc |
593 |
Q |
| |
|
| ||||||||||||| |||||||| ||||||||| | |||||||| ||||| || ||||||||| | | |||| |||||| |||| | ||||||||| |
|
|
| T |
23150003 |
gaaaaatttgcacattggagcttttgagcctaaaacgcgtcaactcttaccagccaattagagaagaagagctctctaatcttgtcaaatggattgcttc |
23149904 |
T |
|
| Q |
594 |
ggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaa |
693 |
Q |
| |
|
| || | |||| || |||||| ||||| |||||||| ||||| |||||||| |||||||||| |||||||||||||| || | |||||||||||| |
|
|
| T |
23149903 |
gaaggaaggatcacccatcaacctcactcaagctgtaatttctataatatacaccattgtttcaaaagctgcctttggcaagaagttcaaagaccaagac |
23149804 |
T |
|
| Q |
694 |
aaatttatatca |
705 |
Q |
| |
|
|||||||||||| |
|
|
| T |
23149803 |
aaatttatatca |
23149792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 22939479 - 22939596
Alignment:
| Q |
294 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
393 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||||||| | |||||| || || ||||||| ||||||| || |
|
|
| T |
22939479 |
aaaatatggaccattaatgcatctaaagcttggagaagtttctactattgtggtttcatcagctgaatatgcaaaagaagtgatgaaaaaccatgatctt |
22939578 |
T |
|
| Q |
394 |
cactttgcaacaaggcct |
411 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
22939579 |
gtctttgcatcaaggcct |
22939596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 220 - 332
Target Start/End: Complemental strand, 22947852 - 22947740
Alignment:
| Q |
220 |
aagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttc |
319 |
Q |
| |
|
|||||||| || |||||||| ||||| |||||| | |||||| ||| |||||||||||||| || ||| | || |||||||| || || |||||||||| |
|
|
| T |
22947852 |
aagctaccaatcataggaaacatacataatcttattggctctccaccacatagaaaattaagagaattgtcaaataaatatggccctttaatgcatcttc |
22947753 |
T |
|
| Q |
320 |
aacttggagaagt |
332 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
22947752 |
aacttggtgaagt |
22947740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 270 - 488
Target Start/End: Complemental strand, 22987534 - 22987316
Alignment:
| Q |
270 |
tagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaag |
369 |
Q |
| |
|
|||||||||||| || || || |||||||||||||||||||||||||| |||||||| || | | | ||||| |||| ||| | || |||||| | |
|
|
| T |
22987534 |
tagaaaattaagagatttagcaaaaaaatatggacccttgatgcatctacaacttggtgagatatttttcattgttgtttcctcaccagaagttgcaagg |
22987435 |
T |
|
| Q |
370 |
gaggttatgaaaacccatgatattcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctcctt |
469 |
Q |
| |
|
||||| ||||||| ||||||||| |||||| |||||||| | | |||| | || ||| | ||||||||||| ||| ||| ||||||| |||| |
|
|
| T |
22987434 |
gaggtcttgaaaactcatgatattatatttgcatcaaggcctcatcttctagtcttggagatagtatcttacaattcaacagatatagctttttcacctt |
22987335 |
T |
|
| Q |
470 |
atggtgattattggagaca |
488 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22987334 |
atggtgattattggagaca |
22987316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 23147441 - 23147359
Alignment:
| Q |
92 |
ccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaag |
174 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||| |||||||| || || | |||||||| || |||||||| |
|
|
| T |
23147441 |
ccatggctctactagtcctctacttgccatatattttcttctttatcctcttaacccttatagtacaaaagataagaaagaag |
23147359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 294 - 411
Target Start/End: Original strand, 22914072 - 22914189
Alignment:
| Q |
294 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
393 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||||||||||||| | |||||||| || | ||| || || || ||||||| |||||| || |
|
|
| T |
22914072 |
aaaatatggacccttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaaagaagtgttgaaaacacatgatctt |
22914171 |
T |
|
| Q |
394 |
cactttgcaacaaggcct |
411 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
22914172 |
gtctttgcatcaaggcct |
22914189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 334
Target Start/End: Complemental strand, 22973690 - 22973576
Alignment:
| Q |
220 |
aagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttc |
319 |
Q |
| |
|
|||||||| || || ||||| ||||| |||||| | |||||| ||| |||||||||||||| || ||| | | ||||||||| | || |||||||||| |
|
|
| T |
22973690 |
aagctaccaatcattggaaacatacataatcttattggctctccaccacatagaaaattaagagaattgtcaacaaaatatggtgctttaatgcatcttc |
22973591 |
T |
|
| Q |
320 |
aacttggagaagttt |
334 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
22973590 |
aacttggtgaagttt |
22973576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 23037689 - 23037607
Alignment:
| Q |
92 |
ccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaag |
174 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||| ||||||||||| |||||||| || || | |||||||| || |||||||| |
|
|
| T |
23037689 |
ccatggctctaatagttctctacttgccatattttttctcctttttcctcttaacccttatagtacaaaagataagaaagaag |
23037607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 22934019 - 22933902
Alignment:
| Q |
294 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
393 |
Q |
| |
|
|||||||||||| || |||||||| | ||||||||||||||||||||||| | |||||||| || | ||| || || || ||||||| |||||| || |
|
|
| T |
22934019 |
aaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaaagaagtgttgaaaacacatgatctt |
22933920 |
T |
|
| Q |
394 |
cactttgcaacaaggcct |
411 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
22933919 |
gtctttgcatcaaggcct |
22933902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 22947629 - 22947584
Alignment:
| Q |
443 |
attccacaagtatctctttttctccttatggtgattattggagaca |
488 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22947629 |
attcaacaagtatagctttttcaccttatggtgattattggagaca |
22947584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 92 - 773
Target Start/End: Original strand, 4991 - 5675
Alignment:
| Q |
92 |
ccatggctctactagtcctctacttgtcatatcttttctcctttgtcctcttagccattgttgtacaaaaagtaggaaagaagctcnnnnnnncagactc |
191 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4991 |
ccatggctctacaagtcctctacgtgtcattatttttctcctttgttctcttagcccttcttgtacaaaaagtaggaaagaagctcaagaaaacagactc |
5090 |
T |
|
| Q |
192 |
aacttttaacctcccaaaagggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggcc |
291 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5091 |
aacatttaaccttccaaaagggcctagaaagctacctattataggaaatattcacaatttgctaagctctcaaccccataggaaattaagtgacttggcc |
5190 |
T |
|
| Q |
292 |
aaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgata |
391 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||| | || | || ||||| |||||||| ||||||| |
|
|
| T |
5191 |
aaaaaatatggacccgtgatgcatcttcaacttggagaaatttcaactattgttatttcatcaccagattacgctcgagaggtgatgaaaactcatgata |
5290 |
T |
|
| Q |
392 |
ttcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggc |
491 |
Q |
| |
|
|| |||| |||||||||||| || | |||||| | |||||| || |||||||||| |||| ||| |||| ||||||| ||| |||| |||||||| | |
|
|
| T |
5291 |
ttaacttcgcaacaaggcctcaaattctagctgtagaaataatgacttacaattcaacaaatataatttttgctccttacggtaattactggagacaagt |
5390 |
T |
|
| Q |
492 |
acgtaaaatttgcacatcagagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgct |
591 |
Q |
| |
|
| | ||||| ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||| | ||| |||| ||||| |||| | ||||||| |
|
|
| T |
5391 |
aagaaaaatatgcacattcgagcttttaagccttaaaagggtcaactcctaccaaccaataagagaagatgttctctctgatcttgtcaaatggattgct |
5490 |
T |
|
| Q |
592 |
tcggagaatggattgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaag |
691 |
Q |
| |
|
|| ||||| |||| |||||||| |||| ||||| || ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
5491 |
tcagagaacggatcaccaatcaatctcacaaaagctttaatttcttcaatatacacaattgtttcgagggcagcctttggcaataaatgcaaagaccaag |
5590 |
T |
|
| Q |
692 |
aaaaatttatatcattggtaaaagaatctacaaagattgcagca-gttttgacttgggaga-ttgtttccttct-ctaaatggct |
773 |
Q |
| |
|
|||||||||||||| |||||||| || | | || |||||||| | |||||||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
5591 |
aaaaatttatatcagtggtaaaacaaacaataaggattgcaggaggttttgacttgggagatttgtttccatctgctaaatggct |
5675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 195; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 210 - 785
Target Start/End: Complemental strand, 21781344 - 21780766
Alignment:
| Q |
210 |
agggcctagaaagctacctattataggaaatatacacaatcttctaagctctcaaccccatagaaaattaagtgacttggccaaaaaatatggacccttg |
309 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| || ||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
21781344 |
agggcctagaaagttacctattataggaaatatacacaatctgttaagctctcaacccaatcgaagattaagagacttggccaaaaaatatggaccagtg |
21781245 |
T |
|
| Q |
310 |
atgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatattcactttgcaacaaggc |
409 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||| | |||| ||| |||||||| ||||||||| |||||||| |||||| |||||| |
|
|
| T |
21781244 |
atgcatcttcaacttggagaggtttctactattgtcattacatctccggagtgtgctaaggaggtgatgaaaaccaatgatattaactttggttcaaggc |
21781145 |
T |
|
| Q |
410 |
ctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttatggtgattattggagacaggcacgtaaaatttgcacatc |
509 |
Q |
| |
|
|| | || || || |||||| || |||| ||| ||||| ||| | | ||||||||||| | || |||| |||| ||| ||||| ||||||| |
|
|
| T |
21781144 |
ctcacctcttatcttcagaaataatgacttataatggcacaaatatagcctggtctccttatggcaactactggaaacagctacgaaaaatctgcacatt |
21781045 |
T |
|
| Q |
510 |
agagcttttaagcctaaaaagggtcaactcataccaaccgattagagaaaaggttttctccaatcttatcaagtcgattgcttcggagaatggattgcca |
609 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||||||| ||| | ||||| ||| ||||||||| |||| |
|
|
| T |
21781044 |
agagcttttaagccttaaaagagtcaactcacaccaaccgattagagaagaggtgctctccaatcttgtcagatggattgtttcacagaatggatcgcca |
21780945 |
T |
|
| Q |
610 |
atcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcattgg |
709 |
Q |
| |
|
|||||| ||||| |||||||| |||||| ||||||| |||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
21780944 |
atcaacctcactcaagctgtaacttcttcagtatacactattgtttcgaggtccgcctttggaaataaatgcaaagaccaagaaaaatttatatcagtta |
21780845 |
T |
|
| Q |
710 |
taaaagaatctacaaagattgcagca-gttttgacttgggaga-ttgtttccttct-ctaaatggcttcaatatgttac |
785 |
Q |
| |
|
||||| |||| | ||| || ||||| ||||| | |||||||| |||||||||||| |||||||| || || ||||||| |
|
|
| T |
21780844 |
taaaacaatcgataaaagtttcagcaggttttaatttgggagatttgtttccttctactaaatggattgaacatgttac |
21780766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 14307712 - 14307571
Alignment:
| Q |
270 |
tagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaag |
369 |
Q |
| |
|
||||| |||||| || || |||||||||||||||||||||||||||||||||||||| || | | | ||||| ||||| ||| |||| |||| ||| |
|
|
| T |
14307712 |
tagaagattaagagatttagccaaaaaatatggacccttgatgcatcttcaacttggtgagatctttttcattgttatttcttcacctgaagttgctaag |
14307613 |
T |
|
| Q |
370 |
gaggttatgaaaacccatgatattcactttgcaacaaggcct |
411 |
Q |
| |
|
|||||| | ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
14307612 |
gaggttttaaaaacacatgatattatctttgcatcaaggcct |
14307571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 270 - 411
Target Start/End: Complemental strand, 23611599 - 23611458
Alignment:
| Q |
270 |
tagaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaag |
369 |
Q |
| |
|
||||| |||||| || || |||||||||||||||||||||||||||||||||||||| || | | | ||||| ||||| ||| | || |||||||| |
|
|
| T |
23611599 |
tagaagattaagagatttagccaaaaaatatggacccttgatgcatcttcaacttggtgagatctttttcattgttatttcttcaccagaagttgcaaag |
23611500 |
T |
|
| Q |
370 |
gaggttatgaaaacccatgatattcactttgcaacaaggcct |
411 |
Q |
| |
|
|||||| | ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
23611499 |
gaggttttaaaaacacatgatattatctttgcatcaaggcct |
23611458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 272 - 488
Target Start/End: Complemental strand, 12611366 - 12611150
Alignment:
| Q |
272 |
gaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaagga |
371 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||||||| || ||||||||||| | ||| | ||||| ||||||| | |||| ||| | ||| |
|
|
| T |
12611366 |
gaaaattaagagacttggcgaaaatttatggacccttgatgcacctacaacttggagagatctctgcaattgttgtttcatcgccagagtatgctaggga |
12611267 |
T |
|
| Q |
372 |
ggttatgaaaacccatgatattcactttgcaacaaggcctaaagtcctagctatcgaaatattgtcttacaattccacaagtatctctttttctccttat |
471 |
Q |
| |
|
||| | |||||||||||| | |||||| | ||||||||| | ||| |||| ||||||||||| || ||| |||| ||| ||||||| |||||| |
|
|
| T |
12611266 |
ggtacttaaaacccatgatgtaatatttgcatctaggcctaaacttctaactatagaaatattgtcatatgattacacagatattgctttttcaccttat |
12611167 |
T |
|
| Q |
472 |
ggtgattattggagaca |
488 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12611166 |
ggaaattattggagaca |
12611150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 63499 - 63442
Alignment:
| Q |
272 |
gaaaattaagtgacttggccaaaaaatatggacccttgatgcatcttcaacttggaga |
329 |
Q |
| |
|
||||||| |||||||||||||||| | ||||| |||||||||| || ||||||||||| |
|
|
| T |
63499 |
gaaaattgagtgacttggccaaaacacatggatccttgatgcagctacaacttggaga |
63442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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