View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_14 (Length: 391)
Name: NF1681_high_14
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 156 - 380
Target Start/End: Complemental strand, 52995498 - 52995274
Alignment:
| Q |
156 |
taactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaaagttgcaaaaaagct |
255 |
Q |
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| T |
52995498 |
taactaaattattttcattttggtctaattaattaggtgatcaaaattgtagtgatcaagatgtcttcttctgaaggagggaaaaagttgcaaaaaagct |
52995399 |
T |
|
| Q |
256 |
actttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggtttctgttatagttcc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52995398 |
actttgatgtggtgggattatgttgttcctcagaggtacctctgattgaaaacattctcaaacctcttcaaggtgtcaaagaggtttctgttatagttcc |
52995299 |
T |
|
| Q |
356 |
atcaagaacagtcatcgttgttcat |
380 |
Q |
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| T |
52995298 |
atcaagaacagtcatcgttgttcat |
52995274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 52995639 - 52995568
Alignment:
| Q |
17 |
acttgtctttcttctcatctctctattttctaagtaacaaggttatatgattttccaacactcttaaactca |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52995639 |
acttgtctttcttctcatctctctattttctaagtaacaaggtgatatgattttccaacactcttaaactca |
52995568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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