View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_18 (Length: 369)
Name: NF1681_high_18
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 54599948 - 54599579
Alignment:
| Q |
1 |
aaattgataaaggagaattcaattagaat------------tgcataaaagagaaatagagaagaataagtctagaggattaagtgattattctactaga |
88 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54599948 |
aaattgataaaggagaattcaattagaattggtgttcccggtgcataaaagagaaatagagaagaataagtctagagaattaagtgattattctactaga |
54599849 |
T |
|
| Q |
89 |
gagtatcaaaaagagaaaagaagactaaatccaaaacttactcgccaaaatttaagtttccttaattttaggatcactcgccacatgttcatttacctca |
188 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54599848 |
gagtatcaaaaggagaaaagaagactaaatccaaaacttactcgccacaatttaagtttccttaattttaggatcactcgccacatgttcatttacctca |
54599749 |
T |
|
| Q |
189 |
atcaattatttatgccaaatcaaaaaacttgatataagttttcc---nnnnnnnnntcatgtataggtgaactcattctaaatatgaaagagttgaaatg |
285 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54599748 |
atcaactatttatgccaaatcaaaaaacttgatataagtttttcaaaaaaaaaaaatcatgtataggtgaactcattctaaatatgaaagagttgaaatg |
54599649 |
T |
|
| Q |
286 |
gataaaattgataattttaatagtttgtaggtgttagagtgtaagtgtaggggagtaggaggatatattt |
355 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54599648 |
gataaaattgataattataatagtttgtaggtgttagagtgtaagtgtaggggagtaggaggatatattt |
54599579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 39773275 - 39773206
Alignment:
| Q |
137 |
aatttaagtttccttaattttaggatcactcgccacatgttcatttacctcaatcaattat-ttatgcca |
205 |
Q |
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| T |
39773275 |
aattcaagcttccttaattttaggatcactagccacatgtccatttttctcaaccaattatgttatgcca |
39773206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 32848095 - 32848158
Alignment:
| Q |
146 |
ttccttaattttaggatcactcgccacatgttcatttacctcaatcaattat-ttatgccaaat |
208 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||| |||| || ||||||||||| |
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| T |
32848095 |
ttccttgattttaggatcatgagccacatgttcatttacctcaaccaatgatgttatgccaaat |
32848158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 6919416 - 6919358
Alignment:
| Q |
149 |
cttaattttaggatcactcgccacatgttcatttacctcaatcaattat-ttatgccaa |
206 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||| |||||| ||||||| ||||||||| |
|
|
| T |
6919416 |
cttaattttagtatcactagccacatgtccatttgcctcaaccaattatgttatgccaa |
6919358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 34272339 - 34272277
Alignment:
| Q |
147 |
tccttaattttaggatcactcgccacatgttcatttacctcaatcaattat-ttatgccaaat |
208 |
Q |
| |
|
||||| |||||||||||||| | ||||||| ||||||||| || ||||||| ||||||||||| |
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|
| T |
34272339 |
tccttgattttaggatcactagtcacatgtccatttacctaaaccaattatgttatgccaaat |
34272277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 5700018 - 5699957
Alignment:
| Q |
146 |
ttccttaattttaggatcactcgccacatgttcatttacctcaatcaattat-ttatgccaa |
206 |
Q |
| |
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|||||| |||||||||||||| | ||| ||||||||||||| || ||||||| ||||||||| |
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| T |
5700018 |
ttccttgattttaggatcactagtcacgtgttcatttaccttaaccaattatgttatgccaa |
5699957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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