View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_2 (Length: 610)
Name: NF1681_high_2
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1681_high_2 |
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[»] scaffold2079 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 6346380 - 6346967
Alignment:
Q |
8 |
ccaagaaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagct |
107 |
Q |
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T |
6346380 |
ccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagtt |
6346479 |
T |
|
Q |
108 |
cttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatactt |
207 |
Q |
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T |
6346480 |
cttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatactt |
6346579 |
T |
|
Q |
208 |
gcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattc |
307 |
Q |
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T |
6346580 |
gtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattc |
6346679 |
T |
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Q |
308 |
aagaaaagaaaatgttagcaatagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtga |
406 |
Q |
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T |
6346680 |
aagaaaataaaatgttagcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtga |
6346779 |
T |
|
Q |
407 |
attatgagctgagaattgaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttccttgtgccattgttcctcttactgt |
506 |
Q |
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T |
6346780 |
attatgagctgagaattgaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttccttgtgccattgttcctcttactgt |
6346879 |
T |
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Q |
507 |
gagctcaacactaacttcagtattgttatgaagcatggcatccatggaaggaatagagaaaagcttgtattgatagtaatgagaaagt |
594 |
Q |
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T |
6346880 |
gagctcaacacaaatttcagtattgttatgaagcatggcatccatggaaggaaaagagaaaagcttgtattgatagtaatgagaaagt |
6346967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 6219725 - 6219562
Alignment:
Q |
13 |
aaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga |
112 |
Q |
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T |
6219725 |
aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga |
6219626 |
T |
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Q |
113 |
tgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
176 |
Q |
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T |
6219625 |
tgtgaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa |
6219562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 314
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
Q |
57 |
tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa |
156 |
Q |
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T |
6242845 |
tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa |
6242746 |
T |
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Q |
157 |
agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt |
256 |
Q |
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T |
6242745 |
agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt |
6242646 |
T |
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Q |
257 |
ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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T |
6242645 |
ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa |
6242588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6333269 - 6333434
Alignment:
Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
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T |
6333269 |
aaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgat |
6333368 |
T |
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Q |
114 |
gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
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T |
6333369 |
gtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6333434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa |
314 |
Q |
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T |
6326013 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa |
6326107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
Q |
220 |
gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa |
319 |
Q |
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T |
6333490 |
gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa |
6333588 |
T |
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Q |
320 |
tgttagcaata |
330 |
Q |
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|||||| |||| |
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T |
6333589 |
tgttaggaata |
6333599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6325792 - 6325957
Alignment:
Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
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T |
6325792 |
aaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgat |
6325891 |
T |
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Q |
114 |
gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc |
179 |
Q |
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T |
6325892 |
gtgaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc |
6325957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
Q |
275 |
cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt |
337 |
Q |
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T |
6219457 |
cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt |
6219395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 909 - 823
Alignment:
Q |
219 |
tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat |
305 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
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T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat |
823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 1096 - 992
Alignment:
Q |
14 |
aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat |
113 |
Q |
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|||||||||||||||| | ||||| | |||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| |
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T |
1096 |
aaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgat |
997 |
T |
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Q |
114 |
gtgaa |
118 |
Q |
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||||| |
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T |
996 |
gtgaa |
992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 5690899 - 5690866
Alignment:
Q |
527 |
tattgttatgaagcatggcatccatggaaggaat |
560 |
Q |
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T |
5690899 |
tattgttatgaaacatggcatccatggaaggaat |
5690866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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