View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_20 (Length: 359)
Name: NF1681_high_20
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1681_high_20 |
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[»] scaffold1862 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 35043112 - 35043199
Alignment:
Q |
117 |
ttataagcattatgaatgcataagttacacctaataatgtttctaaagaatcaaaattaaaggatagcaagaaacgataaatgatttt |
204 |
Q |
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T |
35043112 |
ttataagcattatgaatgcataagttacacctaataatgtttctaaataatgaaaattaaaggatagcaagaaacgataaatgatttt |
35043199 |
T |
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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 35043225 - 35043291
Alignment:
Q |
206 |
tcaggtgtgatcctttaataattttattttgttgggataataggagccattggatcaaagaattaca |
272 |
Q |
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T |
35043225 |
tcaggtgtgatccttcaataattttattttgttgggataataggagtaattggatcaaagaattaca |
35043291 |
T |
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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 35043055 - 35043105
Alignment:
Q |
18 |
taaataatcccaattgtgtatagggatcttgatttcaactcattgcacata |
68 |
Q |
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T |
35043055 |
taaataatcccaattgtatatagggatcttgatttcaactcattgaacata |
35043105 |
T |
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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 35042835 - 35042800
Alignment:
Q |
206 |
tcaggtgtgatcctttaataattttattttgttggg |
241 |
Q |
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T |
35042835 |
tcaggtgtgatccttcaataattttattttgttggg |
35042800 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 29101906 - 29101946
Alignment:
Q |
268 |
ttacacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
29101906 |
ttacacctgatgtcaacggatcctgcctatatatatatata |
29101946 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 50847365 - 50847309
Alignment:
Q |
210 |
gtgtgatcctttaataattttattttgttgggataataggagccattggatcaaaga |
266 |
Q |
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T |
50847365 |
gtgtgatccttcaatattttcattttgttgggataatacgagcctttggattaaaga |
50847309 |
T |
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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 52413657 - 52413697
Alignment:
Q |
268 |
ttacacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
52413657 |
ttacacctggtgtcaacggatcctgtctctatatatatata |
52413697 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 36237655 - 36237617
Alignment:
Q |
270 |
acacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
36237655 |
acacctggtgtcaacggatcctgactctctatatatata |
36237617 |
T |
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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 8541773 - 8541737
Alignment:
Q |
272 |
acctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
8541773 |
acctgatgtcaacggatcctgactctatatatatata |
8541737 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 23995330 - 23995293
Alignment:
Q |
271 |
cacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
23995330 |
cacctgatgtcaacggatcctgactctatatatatata |
23995293 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 234724 - 234684
Alignment:
Q |
270 |
acacctgatgtcaacggatcctgcctctctatatatataaa |
310 |
Q |
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T |
234724 |
acacctggtgtcaacggatcctgactctatatatatataaa |
234684 |
T |
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Target: scaffold1862 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1862
Description:
Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 67 - 107
Alignment:
Q |
268 |
ttacacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
67 |
ttacacctggtgtcaacggatcctgtctctatatatatata |
107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23621688 - 23621648
Alignment:
Q |
268 |
ttacacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
23621688 |
ttacacctggtgtcaacggatcctacctctatatatatata |
23621648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23738441 - 23738401
Alignment:
Q |
268 |
ttacacctgatgtcaacggatcctgcctctctatatatata |
308 |
Q |
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T |
23738441 |
ttacacctggtgtcaacagatcctacctctctatatatata |
23738401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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