View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_21 (Length: 356)
Name: NF1681_high_21
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 52066577 - 52066910
Alignment:
| Q |
19 |
gtgccagcagatattggatagtatacttgaggacttatatatatgttggttttattagtttcctttgaactagagacaaagcattctttaaatctcttta |
118 |
Q |
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| T |
52066577 |
gtgccagcagatattggatagtatacttgaggacttatatatatgttggttttattagtttcctttgaactagagacaaagcattctttaaatctcttta |
52066676 |
T |
|
| Q |
119 |
cttagtcgtcacatttgtttggtgcatatagtgcattaaataaaggcttcagagtgaagaaacggtcaattacttttcaaaacgaatttatagatgtatg |
218 |
Q |
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| T |
52066677 |
cttagtcgtcacatttgtttggtgcatatagtgcattaaataaaggcttcagagtgaagaaacggtcaatcacttttcaaaacgaatttatagatgtatg |
52066776 |
T |
|
| Q |
219 |
aaaacttcgttacaatctcaacaattgaactttaacaaatgcctaaattctgnnnnnnnatgaaacatcgaacacaatgtgacacgtcgacatcaatagt |
318 |
Q |
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| T |
52066777 |
aaaacttcgttacaatctcaacaattgaactttaacaaatgcctaaattctgtttttttatgaaacatcgaacacaacgtgacacatcgacatcaatagt |
52066876 |
T |
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| Q |
319 |
aatttaagaaaatgaattaattaattaattgtag |
352 |
Q |
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| T |
52066877 |
aatttaaaaaaatgaattaattaattaattgtag |
52066910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 52067087 - 52067145
Alignment:
| Q |
298 |
tgacacgtcgacatcaatagtaatttaagaaaatgaattaattaattaattgtagttac |
356 |
Q |
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| T |
52067087 |
tgacacgtcgataccaataataatttaagaaaatgaattaattaattgattatagttac |
52067145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 52066972 - 52067020
Alignment:
| Q |
300 |
acacgtcgacatcaatagtaatttaagaaaatgaattaattaattaatt |
348 |
Q |
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||||||||||| ||||| ||||||||||| || |||||||||||||||| |
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| T |
52066972 |
acacgtcgacaccaataataatttaagaatataaattaattaattaatt |
52067020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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