View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_25 (Length: 349)
Name: NF1681_high_25
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 50 - 334
Target Start/End: Complemental strand, 32888561 - 32888277
Alignment:
| Q |
50 |
agtgttaccattgaagttggtgtctgactcatcacacatgtaacaagttataccaaatgcttagtcaaaagaaaatacataatttgtttaaagagaagaa |
149 |
Q |
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| T |
32888561 |
agtgttaccattgaagttggtgtctgactcatcacacatgtaagaacatataccaaatgcttagtcaaaagaaaatacataatttatttaaagagaagaa |
32888462 |
T |
|
| Q |
150 |
gaatgaaaacttcagtttgattaaaagttaaacggttttggtcgattatgcttattatatatgcnnnnnnnnagtttggaactatttcttttctggaaaa |
249 |
Q |
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| T |
32888461 |
gaatgaaaacttcagtttaattaaaagttaaacggttttggtcgattatgcttattatatatgcttttttttagtttggaactatttgttttctggaaaa |
32888362 |
T |
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| Q |
250 |
tatgctatctattttagatttttagaaccagataaaaatagcaaacgaatacatccatttagtggatgtgtaacactttatatct |
334 |
Q |
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| T |
32888361 |
tatgctatctattttagatttttagaaccagataaaaatagcaaacgaatacatccatttagtggatgtgtaccactttatatct |
32888277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 112 - 334
Target Start/End: Complemental strand, 32883351 - 32883142
Alignment:
| Q |
112 |
agtcaaaagaaaatacataatttgtttaaagagaagaagaatgaaaacttcagtttgattaaaagttaaacggttttggtcgattatgcttattatatat |
211 |
Q |
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| T |
32883351 |
agtcaaaagaaaatacttaa----cttaatgagaaggagaatgaaaccttaagtttaattaaaagttaaacggttttggtcgatt----ttattatatat |
32883260 |
T |
|
| Q |
212 |
gcnnnnnnnnagtttggaactatttcttttctggaaaatatgctatctattttagatttttagaaccagataaaaatagcaaacgaatacatccatttag |
311 |
Q |
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| T |
32883259 |
gc-----tttagtttggaactattttttttttggaaaatatacaatcttttttagatttttagaaccagataaaaatagcaaacgaatacatccatttag |
32883165 |
T |
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| Q |
312 |
tggatgtgtaacactttatatct |
334 |
Q |
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| T |
32883164 |
tggacgtgtaccactttatatct |
32883142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 32877434 - 32877297
Alignment:
| Q |
183 |
ggttttggtcgattatgcttattatatatgcnnnnnnnnagtttggaactatttcttttctggaaaatatgctatctattttagatttttagaaccagat |
282 |
Q |
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| T |
32877434 |
ggttttggtcgattatgcttattatatatgcttttttt-agtttggaactatttgttttttggaaaatatgctat-------------ttagaaccagat |
32877349 |
T |
|
| Q |
283 |
aaaaatagcaaacgaatacatccatttagtggatgtgtaacactttatatct |
334 |
Q |
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| T |
32877348 |
aaaaatagcaaacgaatacatccatgtagtggatgtgtaccactttatatct |
32877297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 32878383 - 32878266
Alignment:
| Q |
50 |
agtgttaccattgaagttggtgtctgactcatcacacatgtaacaagttataccaaatgctt----agtcaaaagaaaatacataatttgtttaaagaga |
145 |
Q |
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|||||||||||||||||||||||| |||||| |||| |||||| || |||||||| ||||| |||||||||||||||| ||| |||||||||| |
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| T |
32878383 |
agtgttaccattgaagttggtgtccgactcaacacatatgtaagaacatataccaattgcttataaagtcaaaagaaaatacttaa----tttaaagaga |
32878288 |
T |
|
| Q |
146 |
agaagaatgaaaacttcagttt |
167 |
Q |
| |
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|| ||||||||| ||| ||||| |
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| T |
32878287 |
aggagaatgaaaccttaagttt |
32878266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 32883403 - 32883366
Alignment:
| Q |
50 |
agtgttaccattgaagttggtgtctgactcatcacaca |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32883403 |
agtgttaccattgaagttggtgtctgactcatcacaca |
32883366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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