View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_28 (Length: 339)
Name: NF1681_high_28
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 49686376 - 49686055
Alignment:
| Q |
1 |
gtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcac |
100 |
Q |
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| T |
49686376 |
gtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaagatgtagtgcatgaactagagccatcctattctgtttcac |
49686277 |
T |
|
| Q |
101 |
aatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtg |
200 |
Q |
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| T |
49686276 |
aatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaattactacacaagtcatgtg |
49686177 |
T |
|
| Q |
201 |
aatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctctagaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
49686176 |
aatttgtgtctatcacggactacaatgattttctatcatttatttgttttgaaattgaaacccaatttttgctaaattctctgatactgattctctagaa |
49686077 |
T |
|
| Q |
301 |
aagtaaaacatgtactccttat |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
49686076 |
aagtaaaacatgtactccttat |
49686055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 49690636 - 49690421
Alignment:
| Q |
1 |
gtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactagagccatcctatt |
91 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||| |||||| | ||| |
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| T |
49690636 |
gtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaatt |
49690537 |
T |
|
| Q |
92 |
ctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaat---tactac |
188 |
Q |
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| T |
49690536 |
gtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattctttgaagcaaattgacacgc--tagttgacttggaaaatgagtaccac |
49690440 |
T |
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| Q |
189 |
acaagtcatgtgaatttgt |
207 |
Q |
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||||||| ||| ||||||| |
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| T |
49690439 |
acaagtcttgtaaatttgt |
49690421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 49679009 - 49678948
Alignment:
| Q |
1 |
gtccatttcctttactagttaagacaagtagcggtaacacagtcaaatgagagaacaaaaga |
62 |
Q |
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||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||| |
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|
| T |
49679009 |
gtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaga |
49678948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 49690378 - 49690319
Alignment:
| Q |
237 |
catttatttgttttgaaattgaaactcactttttgctaaattctctgatactgattctct |
296 |
Q |
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||||||||| |||||||||||||| ||||| ||||||||||||||| || | ||||||| |
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| T |
49690378 |
catttatttcttttgaaattgaaatccacttcttgctaaattctctgctaataattctct |
49690319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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