View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_29 (Length: 331)
Name: NF1681_high_29
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_29 |
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| [»] scaffold1107 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 44 - 320
Target Start/End: Complemental strand, 31037519 - 31037249
Alignment:
| Q |
44 |
ttgttgaaacacaatacagaagatatagaagctagtctaatcaacaatgaagaagatgggcaccatgttccttagttgcttgtgctacaagtaattgaag |
143 |
Q |
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|||| |||||| |||||| |||| |||||||||||| || |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
31037519 |
ttgtagaaacataatacaaaagaaatagaagctagtttactcaacaatgaagaagatgagcaccatgttccttagttacttgtgctacaagtaattgaag |
31037420 |
T |
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| Q |
144 |
cttaggcagttttagagttagttattagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatat |
243 |
Q |
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||||||||||||||| ||||||||||||| |||||||||| | ||||||| | |||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
31037419 |
cttaggcagttttagggttagttattagtagtaactaacttagcagaattgt---acaagtttgttatgatagagtgaagtagagataacaatagcatat |
31037323 |
T |
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| Q |
244 |
catgatccttcattaacaaactgtatatacatgtaatagcttcagttacaagttaaatgtgatattctctcattctt |
320 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |
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| T |
31037322 |
catgatccttcactaacaaac--tatatacatgtaatagcttcagttacaag-tcaatgtgaaattctctcattctt |
31037249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1107 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1107
Description:
Target: scaffold1107; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 863 - 697
Alignment:
| Q |
152 |
gttttagagttagttattagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatatcatgatcc |
251 |
Q |
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||||| |||||||||| ||| |||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
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| T |
863 |
gttttggagttagttaagagtagtaactaacttagctgaattgtaggagaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatcc |
765 |
T |
|
| Q |
252 |
ttcattaacaaactgtatatacatgtaatagcttcagttacaagttaaatgtgatattctctcattctt |
320 |
Q |
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|| | ||||||||| || |||| ||||||| |||| || |||||| ||||||| |||||| ||||||| |
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| T |
764 |
tttactaacaaactataaatacttgtaataacttccttttcaagtt-aatgtgaaattctcccattctt |
697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 152 - 320
Target Start/End: Complemental strand, 14924 - 14758
Alignment:
| Q |
152 |
gttttagagttagttattagttctaactaactttgttgaattgtaggagaagtttgttaagatagagtgaagtagagatcacaatagcatatcatgatcc |
251 |
Q |
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||||| |||||||||| ||| |||| ||||| | |||||||||||| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
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| T |
14924 |
gttttggagttagttaagagtagtaaccaacttagctgaattgtaggaaaagtttgttatgttagagtgaagt-gagatcacaatagcataacatgatcc |
14826 |
T |
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| Q |
252 |
ttcattaacaaactgtatatacatgtaatagcttcagttacaagttaaatgtgatattctctcattctt |
320 |
Q |
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|| | |||| |||| || |||| ||||||| |||| || |||||| ||||||| |||||| ||||||| |
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| T |
14825 |
tttactaactaactataaatacttgtaataacttccttttcaagtt-aatgtgaaattctcccattctt |
14758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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