View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_3 (Length: 543)
Name: NF1681_high_3
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 24982201 - 24982557
Alignment:
| Q |
14 |
atgaagaatgaatgaatg--tatatatatgttgaagcaggtaggactatttatagtcataaacatattctagattttaacttcactcaaatgaaaatgtt |
111 |
Q |
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| T |
24982201 |
atgaagaatgaatgaatgaatatatatatgttgaagcaggtaggactatttatagtcataaacatattttaaattgtaacttcagtcaaatgaaaatgtt |
24982300 |
T |
|
| Q |
112 |
tatgatgcataaactgaccaaaaatacattaaacatgccacaaagcgtctaaaccttcggtgtaattaacaccaccgtccacacaattttggaggattga |
211 |
Q |
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| T |
24982301 |
tacgatgcataaactgaccaaaaatacattaaacatgtcacaaagcgtctaaaccttcggtgtaattaacaccaccgtccacacaatcttggagggttta |
24982400 |
T |
|
| Q |
212 |
aattatataatatgaaactttctataacttttcagattgtataatttgaacagtcctagactgtgtttaagtttggaatttagggtttggatgtttgatt |
311 |
Q |
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| T |
24982401 |
aattatataatctgaaactttctataacttttcgaattgtataattttaacagccctagactgtgtttaagtttggaatttagggtttggatgtttgatt |
24982500 |
T |
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| Q |
312 |
ctaggattggta-----attattgagggaacctaaggatttgtatgtgttgtttgat |
363 |
Q |
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| T |
24982501 |
ctaggattggtacgtatattattgagggaacctaaggatttgtacgtgttgtttgat |
24982557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 303 - 522
Target Start/End: Original strand, 24982550 - 24982769
Alignment:
| Q |
303 |
tgtttgattctaggattggtaattattgagggaacctaaggatttgtatgtgttgtttgatgctgcattttcatggcttatagagggcacaagtataact |
402 |
Q |
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| T |
24982550 |
tgtttgattctaggattggtaattattgagggaacctaaggatttgtacgtgttgtttgatgctgcattttcatggcttatagagggcagaagtataact |
24982649 |
T |
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| Q |
403 |
aggtggtgttgttgctgcgctttcatgactgtgttttccggaaatatttgatatgcgtttaaatttaatggaaagatttgatatggctgagttttctgga |
502 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24982650 |
aggtggtgttgttgctgcactttcatgactgtgttttcgggaaatatttgatatgcgtttaaatttaatggaaagatttgatatggctgtgttttctgga |
24982749 |
T |
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| Q |
503 |
aagatttgatatgcatttga |
522 |
Q |
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| T |
24982750 |
aagatttgatatgcatttga |
24982769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 8010309 - 8010244
Alignment:
| Q |
323 |
aattattgagggaacctaaggatttgtatgtgttgtttgatgctgcattttcatggcttatagaggg |
389 |
Q |
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| T |
8010309 |
aattattgagggaacctaaggatttgt-tgtgttgtttagtgcttcatttttatgggttatagaggg |
8010244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 16741827 - 16741786
Alignment:
| Q |
33 |
atatatatgttgaagcaggtaggactatttatagtcataaac |
74 |
Q |
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| T |
16741827 |
atatatatgttgaagcatgtaagactatttatagtcataaac |
16741786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Complemental strand, 1656093 - 1655987
Alignment:
| Q |
61 |
ttatagtcataaacatattctagattttaacttcactcaaatgaaaatgtttatgatgcataaactgaccaaaaatacattaaacatgccacaaagcgtc |
160 |
Q |
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| T |
1656093 |
ttatagccataaacctatcctggattgtaactataatcaaa-gaaaatgtttaaaatgcataaaccaaccataaattcattaaacacaccacaaatcgtc |
1655995 |
T |
|
| Q |
161 |
taaacctt |
168 |
Q |
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|||||||| |
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| T |
1655994 |
taaacctt |
1655987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 168
Target Start/End: Complemental strand, 7631886 - 7631757
Alignment:
| Q |
37 |
atatgttgaagcaggtaggactatttatagtcataaacatattctagattttaacttcactcaaatgaaaatgtttatgatgcataaactgaccaaaaat |
136 |
Q |
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||||||||||||| | | ||||||||||||||||||| ||| ||||||| ||||| | ||||| | ||| ||||| | |||||||| ||||||||| |
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| T |
7631886 |
atatgttgaagcatgcaagactatttatagtcataaatctatcctagattgtaactatattcaaa-ggaaacgtttacaacgcataaaccgaccaaaaaa |
7631788 |
T |
|
| Q |
137 |
acattaaacatgccacaaagcgtctaaacctt |
168 |
Q |
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| T |
7631787 |
atattaaaca-accacaaaccgtttaaacctt |
7631757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 56579169 - 56579214
Alignment:
| Q |
240 |
ttttcagattgtataatttgaacagtcctagactgtgtttaagttt |
285 |
Q |
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| T |
56579169 |
ttttcagattgtataatccgaaccgtcccagactgtgtttaagttt |
56579214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 16490227 - 16490106
Alignment:
| Q |
55 |
gactatttatagtcataaacatattctagattttaacttcactcaaatgaaaatgtttatgatgcataaactgaccaaaaatacattaaacatgccacaa |
154 |
Q |
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|||||||||||| |||||| ||| ||||| | ||||| || ||||| || | ||||| ||||| ||||| |||||||||||||||||||| |||||| |
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| T |
16490227 |
gactatttatagccataaaattatcctagactgtaactacattcaaaggatac-gtttacgatgcctaaaccgaccaaaaatacattaaacacaccacaa |
16490129 |
T |
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| Q |
155 |
agcgtctaaaccttcggtgtaat |
177 |
Q |
| |
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| |||| ||||||| |||||||| |
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| T |
16490128 |
accgtcaaaacctttggtgtaat |
16490106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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