View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_30 (Length: 323)
Name: NF1681_high_30
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 38654063 - 38654298
Alignment:
| Q |
9 |
agcagagaccatagctgacatctctccctctctattaagaccaggaaacatcattggcaatggcattgacaacgttagttcttgttcctcttcaatataa |
108 |
Q |
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| T |
38654063 |
agcagagaccatagctgacatctctccctctctattaagaccaggaaacatcattggcaatggcattgacaacgttagttcttgtccctcttcaatataa |
38654162 |
T |
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| Q |
109 |
ttcaccaccttttcaattacccttcaacaccaactttaatacaacacaatacttgcactaaactgaaatatgaataaaacagtaacacaagtatacgtat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38654163 |
ttcaccaccttttcaattacccttcaacaccaactttaatacaacacaatacttgcactaaactgaaatatgaataaaacagtaacacaagtatacgtat |
38654262 |
T |
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| Q |
209 |
atat-aaattcttgatatcaaataactaacaagttg |
243 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
38654263 |
atataaaattcttgatatcaaataactaacaagttg |
38654298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 38654285 - 38654328
Alignment:
| Q |
256 |
taactaacaagttgacattgctaagcattgaatttcaattaagg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38654285 |
taactaacaagttgacattgctaagcattgaatttcaattaagg |
38654328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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