View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681_high_33 (Length: 303)
Name: NF1681_high_33
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_33 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 4284557 - 4284835
Alignment:
| Q |
18 |
ttccaaagcttcacctagcagttaaatcgccacgattagcccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaattt |
117 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4284557 |
ttccaaagcttcacctagcacttcaaccgccacgattagcccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaattt |
4284656 |
T |
|
| Q |
118 |
ccaaaatatgttgcaggagtcggtggttctaaacgattccgacaatcaatattcaaagccatcagaccatttttgttctcaatttcttcagctttcattc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4284657 |
ccaaaatatgttgcaggagtcggtggttctaaacaattccgacaatcaatattcaaagccatcagagcatttttgttctcaatttctttagctttcattc |
4284756 |
T |
|
| Q |
218 |
tgtatacccaggcataagctatggatacaacaaaagttgacaagtgaaggtatcttttctcattcctagtagccctttg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
4284757 |
tgtatacccaggcataagctatggatacaacaaaagttgacaagtgaaggtattttttctcattcctagtagccttttg |
4284835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 46 - 285
Target Start/End: Original strand, 4289284 - 4289523
Alignment:
| Q |
46 |
gccacgattagcccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggtt |
145 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
4289284 |
gccacaattagtccatcttcccccaataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggaatcggctgat |
4289383 |
T |
|
| Q |
146 |
ctaaacgattccgacaatcaatattcaaagccatcagaccatttttgttctcaatttcttcagctttcattctgtatacccaggcataagctatggatac |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
4289384 |
ctaaacgattacgacaatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatac |
4289483 |
T |
|
| Q |
246 |
aacaaaagttgacaagtgaaggtatcttttctcattccta |
285 |
Q |
| |
|
|||||||||||||| |||||| | | ||||||| |||||| |
|
|
| T |
4289484 |
aacaaaagttgacaggtgaagattttttttctcgttccta |
4289523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 46 - 288
Target Start/End: Complemental strand, 4266439 - 4266197
Alignment:
| Q |
46 |
gccacgattagcccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggtt |
145 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
4266439 |
gccacaattagtccatcttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgat |
4266340 |
T |
|
| Q |
146 |
ctaaacgattccgacaatcaatattcaaagccatcagaccatttttgttctcaatttcttcagctttcattctgtatacccaggcataagctatggatac |
245 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
4266339 |
ctaaacgattacgacaatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatac |
4266240 |
T |
|
| Q |
246 |
aacaaaagttgacaagtgaaggtatcttttctcattcctagta |
288 |
Q |
| |
|
|||||||||||||| |||||| | | | ||||||||||||||| |
|
|
| T |
4266239 |
aacaaaagttgacaggtgaagatttttattctcattcctagta |
4266197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 70 - 288
Target Start/End: Complemental strand, 4260869 - 4260651
Alignment:
| Q |
70 |
aataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacgattccgacaatcaatat |
169 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
4260869 |
aataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcgttggttctaaacgattcctgcaatcgatat |
4260770 |
T |
|
| Q |
170 |
tcaaagccatcagaccatttttgttctcaatttcttcagctttcattctgtatacccaggcataagctatggatacaacaaaagttgacaagtgaaggta |
269 |
Q |
| |
|
||||| |||||| | |||||||||||||||||| || ||||||||||| ||||| | |||||||| || ||||| ||||| |||||||||||||| | |
|
|
| T |
4260769 |
tcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaagtgaagatt |
4260670 |
T |
|
| Q |
270 |
tcttttctcattcctagta |
288 |
Q |
| |
|
| | |||||| |||||||| |
|
|
| T |
4260669 |
tttattctcagtcctagta |
4260651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 46 - 288
Target Start/End: Original strand, 4255580 - 4255822
Alignment:
| Q |
46 |
gccacgattagcccatctttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggtt |
145 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||||| ||||||| |||||| | ||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
4255580 |
gccaccattagtccatcttcccccaataactcacctgttttaacaatttcaagtcatgttccaatacaatttccaaaatatgttgcaggagtaggtgctc |
4255679 |
T |
|
| Q |
146 |
ctaaacgattccgacaatcaatattcaaagccatcagaccatttttgttctcaatttcttcagctttcattctgtatacccaggcataagctatggatac |
245 |
Q |
| |
|
|||||||||||| ||||| ||||| ||| |||||| | |||| ||||||||||||| || ||||||||||| ||||| | |||||||| || ||| | |
|
|
| T |
4255680 |
ctaaacgattcctgcaatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgc |
4255779 |
T |
|
| Q |
246 |
aacaaaagttgacaagtgaaggtatcttttctcattcctagta |
288 |
Q |
| |
|
||||| |||||||| ||||| | | | ||||||||||||||| |
|
|
| T |
4255780 |
cacaaatgttgacaattgaagatttttattctcattcctagta |
4255822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 70 - 218
Target Start/End: Original strand, 4297903 - 4298051
Alignment:
| Q |
70 |
aataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacgattccgacaatcaatat |
169 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||| |||||||||| |||| |
|
|
| T |
4297903 |
aataactcacttgttttaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggaattggctgatctaaacgagtccgacaatcgatat |
4298002 |
T |
|
| Q |
170 |
tcaaagccatcagaccatttttgttctcaatttcttcagctttcattct |
218 |
Q |
| |
|
||||| |||||| | |||||||||||||||||| || ||||||||||| |
|
|
| T |
4298003 |
tcaaacccatcacaacatttttgttctcaattttctcggctttcattct |
4298051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 4257868 - 4257953
Alignment:
| Q |
70 |
aataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacgatt |
155 |
Q |
| |
|
||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4257868 |
aataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcggttgttctaaacgatt |
4257953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9735 times since January 2019
Visitors: 7932