View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_high_34 (Length: 293)

Name: NF1681_high_34
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_high_34
NF1681_high_34
[»] chr8 (12 HSPs)
chr8 (140-282)||(26414717-26414859)
chr8 (140-262)||(5736531-5736653)
chr8 (140-260)||(34954773-34954893)
chr8 (1-39)||(4625183-4625221)
chr8 (1-39)||(5736398-5736436)
chr8 (1-39)||(8449692-8449730)
chr8 (1-39)||(18029002-18029040)
chr8 (1-39)||(26414585-26414623)
chr8 (1-39)||(26748617-26748655)
chr8 (1-39)||(34954991-34955029)
chr8 (1-39)||(35101772-35101810)
chr8 (1-39)||(35932233-35932271)
[»] chr4 (6 HSPs)
chr4 (140-275)||(36658950-36659089)
chr4 (141-200)||(39048565-39048625)
chr4 (1-39)||(2212002-2212040)
chr4 (1-39)||(46914196-46914234)
chr4 (1-39)||(47749734-47749772)
chr4 (1-39)||(55408223-55408261)
[»] chr1 (9 HSPs)
chr1 (140-262)||(44450699-44450821)
chr1 (140-262)||(44651588-44651710)
chr1 (151-264)||(8465090-8465202)
chr1 (1-39)||(8464943-8464981)
chr1 (1-39)||(27629998-27630036)
chr1 (1-39)||(31471564-31471602)
chr1 (1-39)||(37419882-37419920)
chr1 (1-39)||(39149519-39149557)
chr1 (1-46)||(36231300-36231345)
[»] chr7 (7 HSPs)
chr7 (140-263)||(33379794-33379917)
chr7 (1-39)||(5813654-5813692)
chr7 (1-39)||(30720495-30720533)
chr7 (1-39)||(35028478-35028516)
chr7 (1-39)||(37888756-37888794)
chr7 (1-39)||(39770105-39770143)
chr7 (1-39)||(43570800-43570838)
[»] chr3 (16 HSPs)
chr3 (151-275)||(49086659-49086783)
chr3 (140-260)||(49356730-49356849)
chr3 (144-239)||(33794998-33795094)
chr3 (1-39)||(5844678-5844716)
chr3 (1-39)||(17469792-17469830)
chr3 (1-39)||(25450140-25450178)
chr3 (1-39)||(28410770-28410808)
chr3 (1-39)||(35852898-35852936)
chr3 (1-39)||(42564322-42564360)
chr3 (1-39)||(42602246-42602284)
chr3 (1-39)||(43022979-43023017)
chr3 (1-39)||(47147649-47147687)
chr3 (1-39)||(49356945-49356983)
chr3 (1-39)||(50034668-50034706)
chr3 (1-39)||(51436003-51436041)
chr3 (1-39)||(53722868-53722906)
[»] chr2 (8 HSPs)
chr2 (140-226)||(2778627-2778713)
chr2 (140-260)||(16333818-16333938)
chr2 (140-260)||(16125687-16125807)
chr2 (1-39)||(926508-926546)
chr2 (1-39)||(4296309-4296347)
chr2 (1-39)||(8855375-8855413)
chr2 (1-39)||(36855062-36855100)
chr2 (1-39)||(43494923-43494961)
[»] chr6 (7 HSPs)
chr6 (142-264)||(32360257-32360378)
chr6 (1-39)||(198203-198241)
chr6 (1-39)||(2503721-2503759)
chr6 (1-39)||(6725329-6725367)
chr6 (1-39)||(29951731-29951769)
chr6 (1-39)||(32360124-32360162)
chr6 (1-39)||(34328776-34328814)
[»] scaffold0758 (1 HSPs)
scaffold0758 (1-39)||(6376-6414)
[»] chr5 (9 HSPs)
chr5 (1-39)||(14279211-14279249)
chr5 (1-39)||(23648719-23648757)
chr5 (1-39)||(23809815-23809853)
chr5 (1-39)||(25033564-25033602)
chr5 (1-39)||(25653200-25653238)
chr5 (1-39)||(27405843-27405881)
chr5 (1-39)||(41152533-41152571)
chr5 (1-39)||(41263807-41263845)
chr5 (1-39)||(42318261-42318299)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 140 - 282
Target Start/End: Original strand, 26414717 - 26414859
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 239  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||  ||||||||    
T  26414717 ccagacagccaatcaaaatcaaccacgtgtcacccattatccacaaacaatcttctatctccgcctctcctgcagctcacccgcgcctgttagcgcgtgt 26414816  T
Q  240 tgtgcacgcgccatgcttggccaactattggcttccacatgtc 282  Q
    || ||||||||||||||||||||||||||||||||| ||||||    
T  26414817 tgcgcacgcgccatgcttggccaactattggcttccgcatgtc 26414859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 5736531 - 5736653
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 239  Q
    |||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    |||||||||| |||| ||||||||    
T  5736531 ccagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcttgtctgcgcgtgt 5736630  T
Q  240 tgtgcacgcgccatgcttggcca 262  Q
     | ||||||||||||||||||||    
T  5736631 agcgcacgcgccatgcttggcca 5736653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 34954893 - 34954773
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtg 238  Q
    |||||||||| |||| |||||||||||||||| ||||||||||| ||| |  |||||||||||   |||||||||   ||||||||||||||||| ||||    
T  34954893 ccagacagccaatcagaatcagccacgtgtcaacccattatccataaagatgcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcacgtg 34954795  T
Q  239 ttgtgcacgcgccatgcttggc 260  Q
    ||| |||||||||| |||||||    
T  34954794 ttgcgcacgcgccaggcttggc 34954773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4625221 - 4625183
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  4625221 tttttctgtgtccaaatcaaatgaaccaagtctctattt 4625183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5736398 - 5736436
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  5736398 tttttctgtgtccaaatcaaatgaaccaagtctctattt 5736436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8449730 - 8449692
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  8449730 tttttctgtgtccaaatcaaatgaaccaagtctctattt 8449692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18029040 - 18029002
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  18029040 tttttctgtgtccaaatcaaatgaaccaagtctctattt 18029002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26414585 - 26414623
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26414585 tttttctgtgtccaaatcaaattaaacaagtctctattt 26414623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 26748655 - 26748617
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  26748655 tttttctgtgtccaaatcaaatgaaccaagtctctattt 26748617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34955029 - 34954991
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  34955029 tttttctgtgtccaaatcaaatgaaccaagtctctattt 34954991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35101772 - 35101810
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  35101772 tttttctgtgtccaaatcaaatgaatcaagtctctattt 35101810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35932233 - 35932271
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  35932233 tttttctgtgtccaaatcaaatgatttaagtctctattt 35932271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 140 - 275
Target Start/End: Original strand, 36658950 - 36659089
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaat----cttctctctccacctctcctgcagctcactcgcgcctgtcggcgc 235  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||||    
T  36658950 ccagacagccaatcacaatcagccacgtgtcatccattatccacaaacaatcaatcttctctctccgcctctcctgcagctcactcgcgcctgtcggcgc 36659049  T
Q  236 gtgttgtgcacgcgccatgcttggccaactattggcttcc 275  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  36659050 gtgttgcgcacgcgccatgcttggccaactgttggcttcc 36659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 39048625 - 39048565
Alignment:
Q  141 cagacagccgatcaaaatcagccacgtgtcacccattatccac-aaacaatcttctctctc 200  Q
    |||| |||| |||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  39048625 cagaaagccaatcagaatcagccacgtgtcacccattatccactcaacattcttctctctc 39048565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2212040 - 2212002
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  2212040 tttttctgtgtccaaatcaaatgaaccaagtctctattt 2212002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 46914234 - 46914196
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  46914234 tttttctgtgtccaaatcaaatgaaccaagtctctattt 46914196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 47749772 - 47749734
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  47749772 tttttctgtgtccaaatcaaatgaaccaagtctctattt 47749734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 55408261 - 55408223
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  55408261 tttttctgtgtccaaatcaaatgaaccaagtctctattt 55408223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 44450821 - 44450699
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 239  Q
    |||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||    
T  44450821 ccagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccatcactcgcgcctgtcggcgcgtgt 44450722  T
Q  240 tgtgcacgcgccatgcttggcca 262  Q
     | ||||||||||||||||||||    
T  44450721 agcgcacgcgccatgcttggcca 44450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 44651588 - 44651710
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 239  Q
    |||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||    
T  44651588 ccagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcctgtcggcgcgtgt 44651687  T
Q  240 tgtgcacgcgccatgcttggcca 262  Q
     | ||||||||||||||||||||    
T  44651688 agcgcacgcgccatgcttggcca 44651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 8465090 - 8465202
Alignment:
Q  151 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctc-tcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcg 249  Q
    |||||||||||||| ||||||| || ||||||||||  ||||||||||| | |||| | |||||   ||||||||| |||||||||||||||  ||| ||    
T  8465090 atcaaaatcagccatgtgtcacacactatccacaaagcatcttctctcttcgcctcttgctgca--ccactcgcgcttgtcggcgcgtgttgcacacacg 8465187  T
Q  250 ccatgcttggccaac 264  Q
    || |||||| |||||    
T  8465188 ccttgcttgcccaac 8465202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8464943 - 8464981
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  8464943 tttttctgtgtccaaatcaaatgaaccaagtctctattt 8464981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27630036 - 27629998
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  27630036 tttttctgtgtccaaatcaaatgaaccaagtctctattt 27629998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31471564 - 31471602
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  31471564 tttttctgtgtccaaatcaaatgaaccaagtctctattt 31471602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37419920 - 37419882
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  37419920 tttttctgtgtccaaatcaaatgaaccaagtctctattt 37419882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39149519 - 39149557
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  39149519 tttttctgtgttcaaatcaaatgaactaagtctctattt 39149557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36231300 - 36231345
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctatttttataga 46  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||    
T  36231300 tttttctgtgtccaaatcaaatgatccaagtctctatttatataga 36231345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 140 - 263
Target Start/End: Original strand, 33379794 - 33379917
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 239  Q
    ||||||| || |||| |||| ||||||| ||| |||||||||| |  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  33379794 ccagacaaccaatcacaatctgccacgtttcatccattatccatatgcaatcttgtctctccgcctctcctgcagctcactcgcgcctgtcggcgcgtgt 33379893  T
Q  240 tgtgcacgcgccatgcttggccaa 263  Q
    || ||||| |||||||||||||||    
T  33379894 tgcgcacgagccatgcttggccaa 33379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5813654 - 5813692
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  5813654 tttttctgtgtccaaatcaaatgaaccaagtctctattt 5813692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30720495 - 30720533
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  30720495 tttttctgtgtccaaatcaaatgatctaagtctctattt 30720533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35028516 - 35028478
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  35028516 tttttctgtgtccaaatcaaatgaaccaagtctctattt 35028478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37888756 - 37888794
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  37888756 tttttctgtgtccaaatcaaatgaaccaagtctctattt 37888794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39770105 - 39770143
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  39770105 tttttctgtgtccaaatcaaatgatctaagtctctattt 39770143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43570838 - 43570800
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  43570838 tttttctgtgtccaaatcaaatgaaccaagtctctattt 43570800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 49086659 - 49086783
Alignment:
Q  151 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcgc 250  Q
    |||| ||||||| ||||||||| ||||||||| |  ||||||||||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  49086659 atcacaatcagctacgtgtcactcattatccatatgcaatcttctctctccgcctctcctgcagctcactcgcacctgtcgacgtgtgttgcgcacgcgc 49086758  T
Q  251 catgcttggccaactattggcttcc 275  Q
    |||||||||| || | |||||||||    
T  49086759 catgcttggctaaatgttggcttcc 49086783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 49356849 - 49356730
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtg 238  Q
    |||||||||| |||| |||||||||||| ||| ||||||||||||||| | |||||||||| |   ||||||| | | ||||||||||||||||||| ||    
T  49356849 ccagacagccaatcagaatcagccacgtatcaacccattatccacaaagattcttctctcttcgt-tctcctg-accccactcgcgcctgtcggcgcttg 49356752  T
Q  239 ttgtgcacgcgccatgcttggc 260  Q
    ||| ||||||||||||||||||    
T  49356751 ttgcgcacgcgccatgcttggc 49356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 33795094 - 33794998
Alignment:
Q  144 acagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagc-tcactcgcgcctgtcggcgcgtgt 239  Q
    |||||| |||| |||||| |||||||||||||||||||| |||  || |||||||||| |||||||| ||||  |||||| | ||||||| ||||||    
T  33795094 acagccaatcagaatcagtcacgtgtcacccattatccataaagcatattctctctccgcctctcctacagcaacactcgtgtctgtcggtgcgtgt 33794998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 5844716 - 5844678
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  5844716 tttttctgtgtccaaatcaaatgaaccaagtctctattt 5844678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17469792 - 17469830
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  17469792 tttttctgtgtccaaatcaaatgaaccaagtctctattt 17469830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25450178 - 25450140
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25450178 tttttctgtgtccaaatcaaatgaaccaagtctctattt 25450140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28410770 - 28410808
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  28410770 tttttctgtgtccaaatcaaatgaaccaagtctctattt 28410808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35852936 - 35852898
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  35852936 tttttctgtgtccaaatcaaatgaaccaagtctctattt 35852898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42564322 - 42564360
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  42564322 tttttctgtgtccaaatcaaatgatctaagtctctattt 42564360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42602246 - 42602284
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  42602246 tttttctgtgtccaaatcaaatgaaccaagtctctattt 42602284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43022979 - 43023017
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  43022979 tttttctgtgtccaaatcaaatgaaccaagtctctattt 43023017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 47147649 - 47147687
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  47147649 tttttctgtgtccaaatcaaatgaaccaagtctctattt 47147687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49356983 - 49356945
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  49356983 tttttctgtgtccaaatcaaatgaaccaagtctctattt 49356945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 50034668 - 50034706
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  50034668 tttttctgtgtccaaatcaaatgaaccaagtctctattt 50034706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 51436003 - 51436041
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  51436003 tttttctgtgtccaaatcaaatgatctaagtctctattt 51436041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 53722868 - 53722906
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  53722868 tttttctgtgtccaaatcaaatgaacaaagtctctattt 53722906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 2778713 - 2778627
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcc 226  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  2778713 ccagacaaccaatcaaaatcagccacgtgtcatccattatccacaaagaattttctctctccgcctctcctgcagcacactcgcgcc 2778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 140 - 260
Target Start/End: Original strand, 16333818 - 16333938
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtg 238  Q
    |||||||||| |||| |||||||||||||||| | ||||||||||||| | ||||||||||||   |||||||||   ||||||||||||||||||||||    
T  16333818 ccagacagccaatcagaatcagccacgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtg 16333916  T
Q  239 ttgtgcacgcgccatgcttggc 260  Q
    ||| |||||||||| |||||||    
T  16333917 ttgcgcacgcgccaagcttggc 16333938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 16125807 - 16125687
Alignment:
Q  140 ccagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtg 238  Q
    |||||||||| |||| ||||||||| |||||| | ||||||||||||| | ||||||||||||   |||||||||   ||||||||||||||||||||||    
T  16125807 ccagacagccaatcagaatcagccatgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtg 16125709  T
Q  239 ttgtgcacgcgccatgcttggc 260  Q
    ||| ||| ||| || |||||||    
T  16125708 ttgcgcatgcgtcaggcttggc 16125687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 926546 - 926508
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  926546 tttttctgtgtccaaatcaaatgaaccaagtctctattt 926508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4296347 - 4296309
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  4296347 tttttctgtgtccaaatcaaatgaaccaagtctctattt 4296309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8855375 - 8855413
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  8855375 tttttctgtgtccaaatcaaatgaaccaagtctctattt 8855413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36855100 - 36855062
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  36855100 tttttctgtgtccaaatcaaatgaaccaagtctctattt 36855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 43494961 - 43494923
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  43494961 tttttctgtgtccaaatcaaatgaaccaagtctctattt 43494923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 32360257 - 32360378
Alignment:
Q  142 agacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacct-ctcctgcagctcactcgcgcctgtcggcgcgtgtt 240  Q
    |||||||| |||| ||||||||| ||||||| || ||| ||||||  ||||||||||||| ||| || |||||   ||||||||||||| ||||||||||    
T  32360257 agacagccaatcagaatcagccatgtgtcacacactattcacaaagcatcttctctctccgcctcctgctgca--ccactcgcgcctgttggcgcgtgtt 32360354  T
Q  241 gtgcacgcgccatgcttggccaac 264  Q
    |  || ||||| |||||| |||||    
T  32360355 gcacatgcgccttgcttgcccaac 32360378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 198203 - 198241
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  198203 tttttctgtgtccaaatcaaatgaaccaagtctctattt 198241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2503721 - 2503759
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  2503721 tttttctgtgtccaaatcaaatgaaccaagtctctattt 2503759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6725367 - 6725329
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  6725367 tttttctgtgtccaaatcaaatgaaccaagtctctattt 6725329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29951769 - 29951731
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  29951769 tttttctgtgtccaaatcaaatgatctaagtctctattt 29951731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32360124 - 32360162
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  32360124 tttttctgtgtccaaatcaaatgaatcaagtctctattt 32360162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34328776 - 34328814
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  34328776 tttttctgtgtccaaatcaaatgaaccaagtctctattt 34328814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6414 - 6376
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  6414 tttttctgtgtccaaatcaaatgaaccaagtctctattt 6376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14279211 - 14279249
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  14279211 tttttctgtgtccaaatcaaatgaaccaagtctctattt 14279249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23648757 - 23648719
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  23648757 tttttctgtgtccaaatcaaatgatctaagtctctattt 23648719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23809815 - 23809853
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  23809815 tttttctgtgtccaaatcaaatgatctaagtctctattt 23809853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25033564 - 25033602
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25033564 tttttctgtgtccaaatcaaatgaaccaagtctctattt 25033602  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25653200 - 25653238
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25653200 tttttctgtgtccaaatcaaatgaaccaagtctctattt 25653238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27405881 - 27405843
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  27405881 tttttctgtgtccaaatcaaatgatttaagtctctattt 27405843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41152571 - 41152533
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  41152571 tttttctgtgtccaaatcaaatgaaccaagtctctattt 41152533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41263807 - 41263845
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  41263807 tttttctgtgttcaaatcaaatgaaacaagtctctattt 41263845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42318261 - 42318299
Alignment:
Q  1 tttttctgtgtccaaatcaaatgaaataagtctctattt 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  42318261 tttttctgtgtccaaatcaaatgatttaagtctctattt 42318299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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