View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_35 (Length: 284)
Name: NF1681_high_35
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 31320239 - 31320513
Alignment:
| Q |
1 |
ttccatgctcttgttaattatctatgaaccttcaaattcaaatctttgttagtaaaagttttttctagggcggtgaaatgactggttaaatgagtgaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320239 |
ttccatgctcttgttaattatctatgaaccttcaaattcaaatcgttgttagtaaaagttttttctagggcggtgaaatgactggttaaatgagtgaatc |
31320338 |
T |
|
| Q |
101 |
ttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattcttgggaaagggtgttgagtccaaatcatttacgtattcggttccc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| | ||| ||||| |||||||||||| |
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| T |
31320339 |
ttttttgcatatctgtaattttctct-ccggtaacattctaaacattttatattcttgggaaagggtgttgagtctagatcgtttacttattcggttccc |
31320437 |
T |
|
| Q |
201 |
tcatgggtggtttctaaagtatcccatatttcttttgtggtcttacaatttaaatcctaaggaattgattcatctc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31320438 |
tcatgggtggtttctaaagtatcccatatttcttttgtggtcttacaatttaaatcctaaggaattcattcatctc |
31320513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 22407973 - 22408095
Alignment:
| Q |
32 |
tcaaattcaaatctttgttagtaaaagttttttctagggcggtgaaatgactggttaaatgagtgaatcttttttgcatatctgtaattttctctcccgg |
131 |
Q |
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|||||||||||| || ||||||| ||||||||||| |||||||| |||| ||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
22407973 |
tcaaattcaaattattattagtaagagttttttctaaggcggtgagatgattggttaaatgagtgaatctcttttgcatatctagaattcattctcccgg |
22408072 |
T |
|
| Q |
132 |
taacattctgaacatttcatatt |
154 |
Q |
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|| |||||| || |||||||||| |
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| T |
22408073 |
tagcattctaaatatttcatatt |
22408095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 33303003 - 33302923
Alignment:
| Q |
95 |
tgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattcttgggaaagggtgttgagtc |
175 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| |
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| T |
33303003 |
tgaatcttttttgcatatctaggattttctctcctggtaaaattctaaacatttcatattcttgggaaagggtattgagtc |
33302923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 175
Target Start/End: Complemental strand, 33303738 - 33303658
Alignment:
| Q |
95 |
tgaatcttttttgcatatctgtaattttctctcccggtaacattctgaacatttcatattcttgggaaagggtgttgagtc |
175 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| |
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| T |
33303738 |
tgaatcttttttgcatatctaggattttctctcctggtaaaattctaaacatttcatattcttgggaaagggtattgagtc |
33303658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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