View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_46 (Length: 244)
Name: NF1681_high_46
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3388375 - 3388140
Alignment:
| Q |
1 |
ccttttgtggtttcatcttcaaatacaccatttcaaaaagttattttgcaaataccaattacttgaatgttcttctttggtgaattgggtcatttggttc |
100 |
Q |
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| T |
3388375 |
ccttttgtggtttcatcttcaaatacaccatttcaaaaagttattttgcaaataccaattacatgaatgttcttctttggtgaattgggtcatttggttc |
3388276 |
T |
|
| Q |
101 |
ttgattctaaaagtgtgactcgtttgttgtgtttacttcattctgctggttcttannnnnnnnnnnnnnnactactggtagcatgtgttggatcaaattt |
200 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
3388275 |
ttgattctaaaagtgt-actcgtttgttgagtttacttcattctgctggttctta-tttttaatttttttattactggtagcatgtgttggatcaaattt |
3388178 |
T |
|
| Q |
201 |
agatactcagtatagttgaaatttcaatggagaataat |
238 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
3388177 |
agatactcagtatagttgaaatttcaatggagagtaat |
3388140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 3366597 - 3366785
Alignment:
| Q |
51 |
aataccaattacttgaatgttcttctttggtgaattgggtcatttggttcttgattctaaaagtgtgactcgtttgttgtgtttacttcattctgctggt |
150 |
Q |
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|||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||| ||| |||||||| |||||||||||| |||| || |||| |
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| T |
3366597 |
aataccaattacatgaatgtcattctttggtcaattggttcatttggttcttgattctgaaaatgtgactcatttgttgtgtttccttctacctattggt |
3366696 |
T |
|
| Q |
151 |
tctta-nnnnnnnnnnnnnnnactactggtagcatgtgttggatcaaatttagatactcagtatagttgaaatttcaatggagaataat |
238 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||| |
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| T |
3366697 |
tcttatttttcatttctttttactactggtagcatgtgttggatcaaatttagattctcactatagttgaaattttcatggagagtaat |
3366785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 3320762 - 3320816
Alignment:
| Q |
184 |
tgtgttggatcaaatttagatactcagtatagttgaaatttcaatggagaataat |
238 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||| |
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|
| T |
3320762 |
tgtgttggatcaaatttagattctcagtctagttaaaatttcaatggagactaat |
3320816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 15805636 - 15805724
Alignment:
| Q |
51 |
aataccaattacttgaatgttcttctttggtgaattgggtcatttggttcttgattctaaaagtgtgactcgtttgttgtgtttacttc |
139 |
Q |
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| T |
15805636 |
aataccaattacatgaatgtcattctttcgtcaattggttcatttggttcttgattctgaaaatttgactcatttgttgtgtttccttc |
15805724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 15805768 - 15805831
Alignment:
| Q |
175 |
ctggtagcatgtgttggatcaaatttagatactcagtatagttgaaatttcaatggagaataat |
238 |
Q |
| |
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||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||| |||| |
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| T |
15805768 |
ctggtagcatgtgttggatcaaatttacattctcactatagttgaaattttcatggagagtaat |
15805831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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