View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_51 (Length: 238)
Name: NF1681_high_51
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 1324268 - 1324170
Alignment:
| Q |
121 |
ttattggtgttactttgcaagagacgctatgtttctacaagcttcacaaagattttcctgcaaaatttatcgactccatcgaaggttttccgatctcct |
219 |
Q |
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| T |
1324268 |
ttattggtgttactttgcaagagacgctatgtttctccaagcttcacaaagattttcctgcaaaatttatagactccatcgaaggttttccgatctcct |
1324170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1324393 - 1324306
Alignment:
| Q |
1 |
atattttattaattaacagtgaaaaagaaatagaagaattatatata--gtagttagctagaacaaattaatgttactttccgaaacc |
86 |
Q |
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| T |
1324393 |
atatttgattaattaacagtgaaaaagaaatagaagaattatatatatagtagttagctagaacaaattaatgttactttccgaaacc |
1324306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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