View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_54 (Length: 237)
Name: NF1681_high_54
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 34135952 - 34136097
Alignment:
| Q |
24 |
aaaccagataccaagtatgtgaccgtggtttagctttgctgacaggttgaaaatgttgaaatactttataatcaacaagaatctcaacaaaccaaaatat |
123 |
Q |
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| T |
34135952 |
aaaccagataccaagtatgtgaccgtggtttagctttgctgacaggttgaaaatgttgaaatactttataatcaacaagaatctcaccaaaccaaaatat |
34136051 |
T |
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| Q |
124 |
attagcaaccagaaacgttaaaaacgaaatttgaaggcctatatca |
169 |
Q |
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| T |
34136052 |
attagcaaccagaaacgttaaaaactaaatttgaaggcctatatca |
34136097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 34136079 - 34136136
Alignment:
| Q |
179 |
aattcgaaagcctatatcaattcaatatttgaagatcaaacataatgaacggtaataac |
237 |
Q |
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|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34136079 |
aatttgaaggcctatatcaattcaatatttga-gatcaaacataatgaacggtaataac |
34136136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 34138959 - 34139004
Alignment:
| Q |
69 |
gttgaaaatgttgaaatactttataatcaacaagaatctcaacaaa |
114 |
Q |
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| T |
34138959 |
gttgtaaatgttgaaatactttataaacaacaagaatctcaccaaa |
34139004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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