View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_58 (Length: 234)
Name: NF1681_high_58
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_58 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 49065425 - 49065640
Alignment:
| Q |
19 |
atatggcatctctactaccactctatggtgctaacagtaatagtatgagaccactttcaatcaaggtgcactctattgttcaaaagccaattcataattt |
118 |
Q |
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| T |
49065425 |
atatggcatctctactaccactctatggtgctaacagtaatagtatgagaccactttcaatcaaggtgcactctattgttcaaaagccaattcataattt |
49065524 |
T |
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| Q |
119 |
ttcatccaatggctttggaactgaaagcacttattatggatatcatggttggtcaagaccccttatgaatcaacaacctggaagaggaaagctactgatg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49065525 |
ttcatccaatggctttggaactgaaagcacttattatggatatcatggttggtcaagaccccttatgaatcaacaacctggaagaggaaagctgctgatg |
49065624 |
T |
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| Q |
219 |
caaactttccaggaaa |
234 |
Q |
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|||||||| ||||||| |
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| T |
49065625 |
caaactttgcaggaaa |
49065640 |
T |
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