View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_high_6 (Length: 482)

Name: NF1681_high_6
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_high_6
NF1681_high_6
[»] chr7 (23 HSPs)
chr7 (190-466)||(48140171-48140447)
chr7 (13-221)||(48140439-48140647)
chr7 (273-387)||(19302471-19302586)
chr7 (303-387)||(33601349-33601433)
chr7 (278-361)||(48470117-48470201)
chr7 (137-235)||(35169993-35170089)
chr7 (276-366)||(46078167-46078258)
chr7 (280-345)||(5947330-5947396)
chr7 (326-387)||(21568457-21568518)
chr7 (303-378)||(19022524-19022599)
chr7 (280-357)||(4970707-4970785)
chr7 (303-345)||(18765373-18765415)
chr7 (276-352)||(38138403-38138480)
chr7 (284-387)||(11619077-11619181)
chr7 (303-362)||(27863664-27863723)
chr7 (276-362)||(36517649-36517736)
chr7 (274-357)||(44989587-44989670)
chr7 (382-425)||(45790454-45790497)
chr7 (155-238)||(46936954-46937037)
chr7 (279-387)||(17944257-17944366)
chr7 (145-238)||(24547667-24547760)
chr7 (321-378)||(27288003-27288060)
chr7 (172-212)||(19020305-19020345)
[»] chr3 (25 HSPs)
chr3 (288-387)||(31365111-31365211)
chr3 (123-237)||(11092827-11092940)
chr3 (285-361)||(584119-584196)
chr3 (284-385)||(20880525-20880627)
chr3 (288-377)||(31365232-31365322)
chr3 (276-361)||(39980802-39980888)
chr3 (285-361)||(24085258-24085335)
chr3 (275-387)||(49556905-49557024)
chr3 (326-387)||(26911632-26911693)
chr3 (286-361)||(21367740-21367816)
chr3 (303-387)||(30443940-30444024)
chr3 (281-355)||(47132397-47132470)
chr3 (281-339)||(20170630-20170689)
chr3 (281-361)||(22882-22963)
chr3 (164-237)||(8246273-8246346)
chr3 (286-358)||(18405752-18405825)
chr3 (333-361)||(201664-201692)
chr3 (317-361)||(402495-402539)
chr3 (123-238)||(2101190-2101306)
chr3 (193-237)||(3448525-3448569)
chr3 (303-339)||(3845502-3845538)
chr3 (282-361)||(9832672-9832752)
chr3 (279-357)||(42799880-42799960)
chr3 (317-361)||(43046738-43046782)
chr3 (285-388)||(51929277-51929381)
[»] chr4 (25 HSPs)
chr4 (281-387)||(54426090-54426197)
chr4 (284-385)||(39603090-39603191)
chr4 (279-387)||(21731570-21731679)
chr4 (285-387)||(15173223-15173326)
chr4 (280-385)||(17822780-17822886)
chr4 (103-238)||(1132156-1132290)
chr4 (278-387)||(24169310-24169420)
chr4 (278-342)||(44797972-44798037)
chr4 (283-358)||(8705017-8705093)
chr4 (278-345)||(18815112-18815180)
chr4 (282-387)||(40830947-40831053)
chr4 (280-361)||(26780-26862)
chr4 (137-238)||(21570856-21570958)
chr4 (280-361)||(39691064-39691146)
chr4 (283-387)||(13126494-13126599)
chr4 (303-372)||(22030265-22030334)
chr4 (278-378)||(42403936-42404036)
chr4 (382-458)||(9760403-9760481)
chr4 (157-240)||(45387238-45387321)
chr4 (382-440)||(53294143-53294201)
chr4 (279-387)||(25904137-25904246)
chr4 (277-345)||(35571543-35571612)
chr4 (317-361)||(49940120-49940164)
chr4 (319-387)||(50681044-50681112)
chr4 (280-387)||(55302296-55302404)
[»] chr1 (34 HSPs)
chr1 (280-378)||(2295152-2295251)
chr1 (273-361)||(38247400-38247489)
chr1 (148-237)||(41187346-41187435)
chr1 (280-387)||(43230687-43230793)
chr1 (283-386)||(3233933-3234037)
chr1 (281-387)||(473211-473317)
chr1 (284-378)||(37617384-37617479)
chr1 (286-354)||(2777971-2778040)
chr1 (314-387)||(49938794-49938867)
chr1 (322-387)||(51929497-51929562)
chr1 (280-387)||(14576569-14576677)
chr1 (279-373)||(33186367-33186462)
chr1 (286-371)||(5720988-5721074)
chr1 (188-238)||(16979580-16979630)
chr1 (103-236)||(2181793-2181926)
chr1 (188-237)||(4274444-4274493)
chr1 (273-361)||(34795354-34795443)
chr1 (276-356)||(36872806-36872887)
chr1 (278-345)||(2295280-2295348)
chr1 (274-345)||(14385702-14385774)
chr1 (303-387)||(29904798-29904882)
chr1 (278-345)||(34952291-34952359)
chr1 (317-361)||(38001668-38001712)
chr1 (137-204)||(3131679-3131746)
chr1 (278-332)||(15477655-15477710)
chr1 (382-429)||(42174849-42174896)
chr1 (382-440)||(3234044-3234102)
chr1 (155-237)||(3242091-3242173)
chr1 (303-345)||(33204333-33204375)
chr1 (284-357)||(50644174-50644248)
chr1 (326-367)||(4445774-4445815)
chr1 (276-340)||(28287893-28287958)
chr1 (321-361)||(7941679-7941719)
chr1 (317-361)||(9572054-9572098)
[»] chr2 (33 HSPs)
chr2 (123-239)||(10231797-10231913)
chr2 (276-428)||(30331755-30331910)
chr2 (274-387)||(15305721-15305835)
chr2 (297-387)||(43279460-43279552)
chr2 (276-361)||(42659122-42659208)
chr2 (105-237)||(2097380-2097512)
chr2 (278-337)||(7928211-7928271)
chr2 (303-387)||(15757597-15757681)
chr2 (279-383)||(32592637-32592744)
chr2 (277-345)||(42868393-42868462)
chr2 (274-345)||(11863990-11864061)
chr2 (154-237)||(35991276-35991359)
chr2 (278-346)||(3312165-3312234)
chr2 (303-339)||(9174910-9174946)
chr2 (304-367)||(32837389-32837453)
chr2 (303-383)||(41851586-41851666)
chr2 (274-387)||(26202075-26202189)
chr2 (280-361)||(31744371-31744453)
chr2 (278-387)||(41812005-41812115)
chr2 (283-339)||(27317025-27317082)
chr2 (281-357)||(27317456-27317533)
chr2 (188-237)||(29933510-29933559)
chr2 (286-345)||(33319737-33319795)
chr2 (188-233)||(41733989-41734034)
chr2 (281-361)||(44590097-44590178)
chr2 (278-345)||(4607014-4607082)
chr2 (103-163)||(13166084-13166144)
chr2 (280-342)||(15370238-15370302)
chr2 (313-357)||(16451195-16451239)
chr2 (317-385)||(24100977-24101045)
chr2 (306-361)||(36125434-36125487)
chr2 (317-361)||(36534841-36534885)
chr2 (283-361)||(43529776-43529856)
[»] chr8 (28 HSPs)
chr8 (274-358)||(43717843-43717928)
chr8 (281-387)||(43045641-43045748)
chr8 (304-385)||(28763417-28763498)
chr8 (278-361)||(30251367-30251451)
chr8 (277-387)||(35643900-35644011)
chr8 (283-372)||(36963272-36963362)
chr8 (303-372)||(26771327-26771396)
chr8 (280-360)||(38648425-38648506)
chr8 (303-387)||(35749509-35749593)
chr8 (279-345)||(38602416-38602483)
chr8 (317-387)||(10758210-10758280)
chr8 (290-387)||(18133703-18133801)
chr8 (287-387)||(12976259-12976360)
chr8 (276-360)||(6882001-6882083)
chr8 (279-386)||(35534527-35534635)
chr8 (284-342)||(9130238-9130297)
chr8 (145-212)||(30011717-30011784)
chr8 (303-345)||(18591915-18591957)
chr8 (188-234)||(24827287-24827333)
chr8 (285-378)||(40859703-40859796)
chr8 (284-345)||(44792745-44792807)
chr8 (276-372)||(15180602-15180698)
chr8 (137-237)||(26762887-26762990)
chr8 (137-170)||(29705914-29705947)
chr8 (278-346)||(29818857-29818926)
chr8 (278-345)||(12496985-12497053)
chr8 (302-358)||(27754479-27754535)
chr8 (303-387)||(31716166-31716250)
[»] chr5 (27 HSPs)
chr5 (282-387)||(16937800-16937906)
chr5 (274-361)||(34102222-34102310)
chr5 (271-361)||(12433079-12433170)
chr5 (279-384)||(10640003-10640109)
chr5 (281-378)||(32942650-32942748)
chr5 (278-359)||(43300953-43301035)
chr5 (410-466)||(16458036-16458093)
chr5 (283-358)||(32941545-32941622)
chr5 (154-239)||(43051535-43051618)
chr5 (283-361)||(1773024-1773101)
chr5 (278-361)||(7705911-7705995)
chr5 (103-166)||(7705316-7705379)
chr5 (320-387)||(16457935-16458002)
chr5 (276-346)||(25461559-25461629)
chr5 (303-345)||(12425662-12425704)
chr5 (278-387)||(12857251-12857361)
chr5 (303-387)||(15015891-15015974)
chr5 (154-196)||(16252643-16252685)
chr5 (272-345)||(32372701-32372775)
chr5 (311-361)||(39248171-39248221)
chr5 (305-359)||(41981644-41981698)
chr5 (280-345)||(42100400-42100466)
chr5 (316-361)||(1464972-1465017)
chr5 (285-361)||(9107163-9107240)
chr5 (277-345)||(34736439-34736508)
chr5 (306-367)||(35445786-35445847)
chr5 (196-232)||(10992035-10992071)
[»] chr6 (11 HSPs)
chr6 (306-361)||(9559364-9559419)
chr6 (277-361)||(6538587-6538672)
chr6 (276-387)||(848036-848147)
chr6 (284-375)||(4163212-4163304)
chr6 (284-375)||(4224833-4224925)
chr6 (303-357)||(33074895-33074949)
chr6 (300-361)||(30536576-30536637)
chr6 (284-357)||(10645304-10645378)
chr6 (280-372)||(30926581-30926674)
chr6 (311-360)||(34009447-34009496)
chr6 (278-337)||(35069525-35069585)
[»] scaffold0057 (1 HSPs)
scaffold0057 (307-361)||(24694-24748)
[»] scaffold0449 (1 HSPs)
scaffold0449 (154-239)||(10587-10670)
[»] scaffold0221 (1 HSPs)
scaffold0221 (280-387)||(22278-22386)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 190 - 466
Target Start/End: Complemental strand, 48140447 - 48140171
Alignment:
Q  190 ttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactctaatcgtaattaataataacattaataagaaaccatacttagggcctgtttg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140447 ttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactctaatcgtaattaataataacattaataagaaaccatacttagggcctgtttg 48140348  T
Q  290 gattggcttatatagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttcata 389  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140347 gattggcttatagagtttatctattggcataagttatgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttcata 48140248  T
Q  390 agttatccaatattatttagaaaaacaacttatagcatattgaaaaacaatctagttattttatcttttgttataaa 466  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140247 agttatccaatattaattagaaaaacaacttatagcatattgaaaaacaatctagttattttatcttttgttataaa 48140171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 48140647 - 48140439
Alignment:
Q  13 catcaatgaattatgaagccccaaacataagcctcacactcaaatacacaacatataataattattataatttaattcataaacaccataaatcaatcat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140647 catcaatgaattatgaagccccaaacataagcctcacactcaaatacacaacatataataattattataatttaattcataaacaccataaatcaatcat 48140548  T
Q  113 aattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48140547 aattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttaca 48140448  T
Q  213 ttgacagtg 221  Q
    |||||||||    
T  48140447 ttgacagtg 48140439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 273 - 387
Target Start/End: Original strand, 19302471 - 19302586
Alignment:
Q  273 tacttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaattt 371  Q
    |||||||  |||||||| |||| ||||| | |||||||||| || |||||||| ||||||| | ||||||||||| |||||||||||||| | |||||||    
T  19302471 tacttagaacctgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaacagcttatgacaattt 19302570  T
Q  372 ttataagattttttca 387  Q
    | ||||  ||||||||    
T  19302571 tcataaacttttttca 19302586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 33601349 - 33601433
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||||||||||||||||||| ||||||||| |||  |||||  |||||||||||||| | ||| |||| ||||| ||||||||    
T  33601349 agcttatctattggcataagttttgtgagactcttttcgagaacttatgaaaacagcttatgacacttttcataagcttttttca 33601433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 361
Target Start/End: Complemental strand, 48470201 - 48470117
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||| |||||||||||| | ||||||||||| | |||||||| | ||||| ||||||||||||  ||||||||||||||    
T  48470201 agggcctgttaggattggcttatttgagcttatctatagacataagttttatgagattgtttgggagaacttatgaaaacagctt 48470117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 35169993 - 35170089
Alignment:
Q  137 tgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaac 235  Q
    ||||||| |||||||| |||||||||||||  |||||||||| |||| || ||||||||||||||||   ||| ||||||| ||| |||||| ||||||    
T  35169993 tgactttaatcataactacttctaaagtca--cacatgattggttatgatttgttgacagtgtaaaagtatttgcattgacggtgtatcaaagttaaac 35170089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 366
Target Start/End: Complemental strand, 46078258 - 46078167
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaac 366  Q
    |||||||||| |||||||||||||| | ||||||||||||| |||||||| |||| |  |||| |||||||  |||||||||||||| ||||    
T  46078258 ttagggcctggttggattggcttattttagcttatctattgacataagttttgtgggtttgttcgggagaagttatgaaaacagcttataac 46078167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 5947396 - 5947330
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||| | ||||||||||||| ||||    
T  5947396 ggcctgtttggattggcttatttgagcttatctattggtataagttttatgagactgtttggaagaa 5947330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 21568457 - 21568518
Alignment:
Q  326 tgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||| ||||| | ||||||    
T  21568457 tgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctcttttca 21568518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 19022524 - 19022599
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||||| || ||| |||| ||||||| ||||||||||||| |||||||||| ||| | |||||||| |||||    
T  19022524 agcttatctactgacatgagttttgtgagattgtttgggagaatttatgaaaacaacttatgacaattttcataag 19022599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 4970707 - 4970785
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    ||||||||||||||| ||||| | |||||||||  || |||||||  ||||||||||||||||||||  ||||||||||    
T  4970707 ggcctgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaaca 4970785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 18765415 - 18765373
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  18765415 agcttatctattgacataagttttgtgagactgtttgggagaa 18765373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 38138403 - 38138480
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatga 352  Q
    |||||||||||||||| || ||||| | |||||||||||||| |||| |||||||||||||  || |||||| |||||    
T  38138403 ttagggcctgtttggaatgacttatttgagcttatctattggaataaattctgtgagactgagtgagagaatttatga 38138480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 11619077 - 11619181
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattt 382  Q
    ||||||||||||||||| | |||||||||| || |||||| |   ||| || | |||||||||| |||||||||| ||| | |||||||| ||||| |||    
T  11619077 tgtttggattggcttatttgagcttatctactgacataagcttcatgaaacagattgggagaatttatgaaaacaacttatgacaattttcataagcttt 11619176  T
Q  383 tttca 387  Q
    |||||    
T  11619177 tttca 11619181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 27863664 - 27863723
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttg 362  Q
    |||||||| | ||||||||||| ||||||||| |||| |||||  |||||||||||||||    
T  27863664 agcttatccactggcataagttttgtgagactatttgagagaacttatgaaaacagcttg 27863723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 36517736 - 36517649
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttg 362  Q
    ||||||||||||||||||   |||| | |||||| ||| ||||||||||| | | ||||||||||||||||  ||| |||||||||||    
T  36517736 ttagggcctgtttggattcatttatttgagcttagctactggcataagttttctaagactgtttgggagaacttattaaaacagcttg 36517649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 44989587 - 44989670
Alignment:
Q  274 acttagggcctgtttggattggcttatatagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    ||||||||| |||||| ||||||||||  || |||||   | ||||||||| ||||||||||||||||| ||  ||||||||||    
T  44989587 acttagggcatgtttgaattggcttattgagtttatccggtagcataagttttgtgagactgtttgggaaaacttatgaaaaca 44989670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 425
Target Start/End: Original strand, 45790454 - 45790497
Alignment:
Q  382 ttttcataagttatccaatattatttagaaaaacaacttatagc 425  Q
    |||||||||||||||||||||  |||| ||||||||||||||||    
T  45790454 ttttcataagttatccaatatagtttataaaaacaacttatagc 45790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 46937037 - 46936954
Alignment:
Q  155 cttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactct 238  Q
    |||||||||||| ||| |||||||||| | || ||||||||   |||||| |||||||   | |||||||||||||||||||||    
T  46937037 cttctaaagtcacacatatgattgattgtgatttgttgacacgataaaactttttacaccaagagtgcatcaaaattaaactct 46936954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 17944257 - 17944366
Alignment:
Q  279 gggcctgtttggattggcttatata-gcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    ||||||||||||| || ||||| || ||||||||| ||||||||| | |||||||||||||  || ||  ||| |||||||||| | ||| |||| |||     
T  17944257 gggcctgtttggagtgacttatttaagcttatctactggcataagctttgtgagactgtttcagacaacttataaaaacagcttatgacacttttcatat 17944356  T
Q  378 gattttttca 387  Q
    | ||||||||    
T  17944357 gcttttttca 17944366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 24547760 - 24547667
Alignment:
Q  145 atcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactct 238  Q
    |||||||| ||||||||| ||| | | ||||||| || | || | ||||||||||||||| ||||||| |||| ||| |||||| | |||||||    
T  24547760 atcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttacactgacggtgtatcaaattcaaactct 24547667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 27288060 - 27288003
Alignment:
Q  321 agttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||| ||||||||| ||||| ||||  |||||||||||||| |||||||||| |||||    
T  27288060 agttttgtgagactatttggaagaacttatgaaaacagcttataacaattttcataag 27288003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 19020305 - 19020345
Alignment:
Q  172 atgattgattataatgtgttgacagtgtaaaacattttaca 212  Q
    |||| ||||| ||||||||||||| ||||||||||||||||    
T  19020305 atgaatgattgtaatgtgttgacaatgtaaaacattttaca 19020345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 31365111 - 31365211
Alignment:
Q  288 tggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttc 386  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||| | |||||||| ||||| |||||||    
T  31365111 tggattggcttatttgagcttatctattggcataagttttgtgagactgtttgggagaacttatgaaagcagcttatgacaattttcataagcttttttc 31365210  T
Q  387 a 387  Q
    |    
T  31365211 a 31365211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 11092827 - 11092940
Alignment:
Q  123 tcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgc 222  Q
    |||||||||  || |||||||||| ||||| ||||||||||||| ||| |||||||||| |||| || ||||||||||||| |||||||| | |||||||    
T  11092827 tcattagaaagatttgacttttattataaccacttctaaagtcaaacagatgattgattctaatatggtgacagtgtaaaa-attttacacttacagtgc 11092925  T
Q  223 atcaaaattaaactc 237  Q
    || ||||||||||||    
T  11092926 atgaaaattaaactc 11092940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 584196 - 584119
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||| ||||| | |||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  584196 gtttggattgacttatttgagcttatctactagcataagttctgtgagactgttttggagaatttatgaaaacagctt 584119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 385
Target Start/End: Complemental strand, 20880627 - 20880525
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattt 382  Q
    ||||||||||||||||| | |||||||||| | |||||||||   | ||||| ||||||||||  |||||||||||||| | |||||||| ||||| |||    
T  20880627 tgtttggattggcttatttgagcttatctacttgcataagtttccttagactatttgggagaacctatgaaaacagcttatgacaattttcataagcttt 20880528  T
Q  383 ttt 385  Q
    |||    
T  20880527 ttt 20880525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 31365232 - 31365322
Alignment:
Q  288 tggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    ||||||||||||| | || |||||||||||||||| || ||||| ||||||||||||||  |||||| ||||||| | |||||||| ||||    
T  31365232 tggattggcttatttgagtttatctattggcataatttttgtgacactgtttgggagaacttatgaatacagcttatgacaattttcataa 31365322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 361
Target Start/End: Complemental strand, 39980888 - 39980802
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||| |||||||||||||||| | | |||||||||| | ||||||||| |||||||||||||  |||||  ||||||||||||||    
T  39980888 ttagggtctgtttggattggcttgtttgagcttatctactagcataagttttgtgagactgtttaagagaacttatgaaaacagctt 39980802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 24085258 - 24085335
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||||| | ||||||||||  |||||||||| |||||||||| || ||||||  ||||||||||||||    
T  24085258 gtttggattggcttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaacagctt 24085335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 49557024 - 49556905
Alignment:
Q  275 cttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagac------tgtttgggagaatgtatgaaaacagcttgtaaca 367  Q
    |||||||||| ||||||||||||||| | |||||||| | ||||||||||| ||||||||      | |||  |||||| |||||||||||||| | |||    
T  49557024 cttagggcctatttggattggcttatctgagcttatcaagtggcataagttttgtgagactcttagtctttcagagaatttatgaaaacagcttatgaca 49556925  T
Q  368 atttttataagattttttca 387  Q
    ||||| ||||| ||||||||    
T  49556924 attttcataagcttttttca 49556905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 26911693 - 26911632
Alignment:
Q  326 tgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||||| |||||||| ||| |||||||||||||| | |||||||| ||||| ||||||||    
T  26911693 tgtgagaccgtttgggataatatatgaaaacagcttatgacaattttcataagtttttttca 26911632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 21367816 - 21367740
Alignment:
Q  286 tttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||| | || |||||||   ||||||||| |||| |||||||||||||||  ||||||||||||||    
T  21367816 tttggattggcttatttgagattatctaccagcataagttttgtgggactgtttgggagaacttatgaaaacagctt 21367740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 30444024 - 30443940
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||||||| |||||||| ||  |||||||||||||| |||   |||||||||||||| | |||||||| | ||| ||||||||    
T  30444024 agcttatctactggcataaatttggtgagactgtttggtagagcttatgaaaacagcttatgacaattttcacaagcttttttca 30443940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Complemental strand, 47132470 - 47132397
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaa 355  Q
    |||||||||||||||||||| | |||||||||| |||||  |||| ||||||||||||| ||||||  ||||||||    
T  47132470 gcctgtttggattggcttatttgagcttatctactggca--agttttgtgagactgttttggagaacttatgaaaa 47132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 339
Target Start/End: Original strand, 20170630 - 20170689
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttg 339  Q
    |||||||||||||||||||| | |||||||||| || ||||||||  |||||||||||||    
T  20170630 gcctgtttggattggcttatttgagcttatctagtgacataagtttagtgagactgtttg 20170689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Original strand, 22882 - 22963
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||  ||||||||||| | | ||| |||| ||||||||||| ||||||| ||||| ||||||  ||||||||||||||    
T  22882 gcctgttgagattggcttatttgaacttgtctactggcataagttttgtgagattgtttaggagaagttatgaaaacagctt 22963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 8246346 - 8246273
Alignment:
Q  164 tcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    ||||||| ||||||| || | || |||||||  |||||||| | ||||||||| |||| |||||||||||||||    
T  8246346 tcatacatatgattggttgtgatttgttgactttgtaaaacttcttacattgaaagtgtatcaaaattaaactc 8246273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 18405752 - 18405825
Alignment:
Q  286 tttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacag 358  Q
    |||||||||| |||| | |||||||||| || |||||||| ||||||||||||||  ||||  |||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtgagactgtttgcaagaacttatgaaaacag 18405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 361
Target Start/End: Complemental strand, 201692 - 201664
Alignment:
Q  333 ctgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||||||||||||||||||    
T  201692 ctgtttgggagaatgtatgaaaacagctt 201664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 402495 - 402539
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||| ||  |||||||||||||||| |||||||||||||||    
T  402495 cataagttttgcaagactgtttgggagaacgtatgaaaacagctt 402539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 2101190 - 2101306
Alignment:
Q  123 tcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgc 222  Q
    ||||||||| ||| |||||||||||||||| | || | |||| | ||||||||||| |  | ||||| ||||| ||||| |  |||| |||||||||||     
T  2101190 tcattagaaacatttgacttttatcataaccagttttcaagttacacacatgattggtagtgatgtgctgacaatgtaacattttttgcattgacagtgg 2101289  T
Q  223 at-caaaattaaactct 238  Q
    ||  |||||||||||||    
T  2101290 atgaaaaattaaactct 2101306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 3448569 - 3448525
Alignment:
Q  193 acagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    |||||||||||| ||||||| |||||||| |||||| ||||||||    
T  3448569 acagtgtaaaactttttacactgacagtgtatcaaagttaaactc 3448525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 3845502 - 3845538
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttg 339  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  3845502 agcttatctactggcataagttttgtgagactgtttg 3845538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 9832672 - 9832752
Alignment:
Q  282 cctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||| ||||| ||||| | ||||||| ||||| |||||||| ||| | ||||||||||||||  | ||||||||||||    
T  9832672 cctgtttagattgacttatttgagcttatttattgacataagttttgtcaaactgtttgggagaacttttgaaaacagctt 9832752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 357
Target Start/End: Original strand, 42799880 - 42799960
Alignment:
Q  279 gggcctgtttggattggcttatat-agc-ttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    |||||||||||||||||||||| | ||| ||||||| || |||| ||| ||||| ||| ||||||||||  ||||||||||    
T  42799880 gggcctgtttggattggcttatttgagctttatctactgacatatgttttgtgaaactctttgggagaacttatgaaaaca 42799960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 43046782 - 43046738
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||| ||| ||||||||||||||||||||  ||||||||||||||    
T  43046782 catatgttttgtgagactgtttgggagaacttatgaaaacagctt 43046738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 51929277 - 51929381
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttt 383  Q
    |||||||||| ||||| | | ||||| || ||||||||||| ||||| ||| |||| |||||| | ||||||||| || | |||||||| ||| | ||||    
T  51929277 gtttggattgacttatttgaccttatttactggcataagttttgtgatactatttgagagaatttctgaaaacagattatgacaattttcataggctttt 51929376  T
Q  384 ttcat 388  Q
    |||||    
T  51929377 ttcat 51929381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 54426197 - 54426090
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataaga 379  Q
    |||||||||||||||||||| | |||||||||| ||||||||||| |||||||||| |||||||||  || ||||||||||| | |||||||| |||||     
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataagttttgtgagactgcttgggagaacttaggaaaacagcttatgacaattttcataagc 54426098  T
Q  380 ttttttca 387  Q
    ||||||||    
T  54426097 ttttttca 54426090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 284 - 385
Target Start/End: Original strand, 39603090 - 39603191
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattt 382  Q
    ||||||||||||||||| | ||||| |||||||| ||||||| ||||||||||||||||||||  || ||||||||||| | |||||||||||||| |||    
T  39603090 tgtttggattggcttatttgagctt-tctattggtataagttttgtgagactgtttgggagaacttaggaaaacagcttatgacaatttttataagcttt 39603188  T
Q  383 ttt 385  Q
    |||    
T  39603189 ttt 39603191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 21731570 - 21731679
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    ||||||||||||||||| |||| | ||| |||||| || |||||||| ||||||| ||||||||||||  |||||||||||||| | |||||||| ||||    
T  21731570 gggcctgtttggattggtttatttgagcatatctactgacataagttttgtgagattgtttgggagaacttatgaaaacagcttatcacaattttcataa 21731669  T
Q  378 gattttttca 387  Q
      ||||||||    
T  21731670 acttttttca 21731679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 387
Target Start/End: Original strand, 15173223 - 15173326
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttt 383  Q
    |||||||||| ||||| | | |||||||| || |||||||| ||||||||||||||||||| | |||||||| ||||| | |||||||| ||||| ||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaatagcttatgacaattttcataagttttt 15173322  T
Q  384 ttca 387  Q
    ||||    
T  15173323 ttca 15173326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 17822780 - 17822886
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    ||||||||||||||  ||||| | |||||||||| || |||||||||||||||||| ||| ||||||  |||||||||||||| | ||| |||| |||||    
T  17822780 ggcctgtttggattaacttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacatttttcataag 17822879  T
Q  379 atttttt 385  Q
     ||||||    
T  17822880 ctttttt 17822886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 1132156 - 1132290
Alignment:
Q  103 aatcaatcataattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaa 202  Q
    ||||||||||||  ||||  ||||||||| ||| |||||||||||||||| | |||||||| || |||||||| || || | |||||| |||| |||||     
T  1132156 aatcaatcataaccgtcagatcattagaaacatttgacttttatcataactaattctaaagacacacacatgactggttgtgatgtgtagacaatgtaat 1132255  T
Q  203 acattttacattgacagtgcatcaaaattaaactct 238  Q
       ||||||| |||||||| || |||||||||||||    
T  1132256 tt-ttttacactgacagtgtatgaaaattaaactct 1132290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 24169420 - 24169310
Alignment:
Q  278 agggcctgtttggattggcttat-atagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttata 376  Q
    ||||| ||||||||||||||||| | || ||||||| ||||||||||| ||||||||| |||| |||||  | | |||| ||||| | ||| |||| |||    
T  24169420 agggcttgtttggattggcttattagagtttatctactggcataagttttgtgagactatttgagagaacttttaaaaatagcttatgacatttttcata 24169321  T
Q  377 agattttttca 387  Q
    |||||||||||    
T  24169320 agattttttca 24169310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 44798037 - 44797972
Alignment:
Q  278 agggcctgtttggattggcttatata-gcttatctattggcataagttctgtgagactgtttggga 342  Q
    |||||||||||||||||||| || || ||||||||| || |||||||| |||||||||||||||||    
T  44798037 agggcctgtttggattggctgatttaagcttatctactgacataagttttgtgagactgtttggga 44797972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 8705093 - 8705017
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacag 358  Q
    ||||||||||||||| || | ||||||||||||| |||||||| |||||||||| |||||||||  ||| |||||||    
T  8705093 ctgtttggattggctcatttgagcttatctattgacataagttttgtgagactgattgggagaacttataaaaacag 8705017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 18815180 - 18815112
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||||||||| | |||||| ||| | ||||||||| |||||||||||||| |||||    
T  18815180 agggcctgtttggattggcttatttgagcttacctactagcataagttttgtgagactgtttgagagaa 18815112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 387
Target Start/End: Original strand, 40830947 - 40831053
Alignment:
Q  282 cctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatga-aaacagcttgtaacaatttttataaga 379  Q
    |||||||||||||||| || | ||||||||||||| |||||||| |||||||||||| || ||||  ||||| |||||||||   |||| |||||||||     
T  40830947 cctgtttggattggctaatttgagcttatctattg-cataagttttgtgagactgttcggaagaaattatgagaaacagcttacgacaacttttataagc 40831045  T
Q  380 ttttttca 387  Q
    ||||||||    
T  40831046 ttttttca 40831053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 26780 - 26862
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||||||| | |||||||| | ||||||||| | ||| |||||||||  |||||  ||||||||||||||    
T  26780 ggcctgtttggattggcttatttgagcttatcaactggcataagctttgttagactgtttccgagaaattatgaaaacagctt 26862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 21570856 - 21570958
Alignment:
Q  137 tgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaa-aacattttacattgacagtgcatcaaaattaaac 235  Q
    ||||||||||||| || ||||||||||||| ||||||||||| || | ||||| ||||| |||||    |||||||| | |||| |||| ||||||||||    
T  21570856 tgacttttatcatgacgacttctaaagtcacacacatgattggttgtgatgtgctgacaatgtaattttattttacactaacagcgcatgaaaattaaac 21570955  T
Q  236 tct 238  Q
    |||    
T  21570956 tct 21570958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 39691064 - 39691146
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||| |||| ||||| | |||||||||| | ||||||||| |||||||||||||| |||||| ||||  ||||||||    
T  39691064 ggcctgtttgaattgacttatttgagcttatctactagcataagttttgtgagactgtttgagagaatttatgggaacagctt 39691146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 13126494 - 13126599
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatt 381  Q
    |||||||||||||||||| | |||||| ||| |  |||||||| ||||||||||||||| ||||  ||| |||||||||| | ||| || | ||||| ||    
T  13126494 ctgtttggattggcttattttagcttacctactaacataagttttgtgagactgtttggaagaacttataaaaacagcttatgacatttatcataagctt 13126593  T
Q  382 ttttca 387  Q
    ||||||    
T  13126594 ttttca 13126599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 22030334 - 22030265
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||| |||||| ||||||||| |||||| || ||||||||||  |||||||||||||| | ||||||||    
T  22030334 agcttgtctattagcataagttttgtgagcctatttgggagaacttatgaaaacagcttatgacaatttt 22030265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 378
Target Start/End: Original strand, 42403936 - 42404036
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttata 376  Q
    ||||||||||||||||| ||||| | |||||||| | || |||||||| |||| | || ||||||||||| | |||||||||||| | |||||||| |||    
T  42403936 agggcctgtttggattgacttatttgagcttatcaactgacataagttttgtgtg-ctatttgggagaatttctgaaaacagcttatgacaattttcata 42404034  T
Q  377 ag 378  Q
    ||    
T  42404035 ag 42404036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 458
Target Start/End: Complemental strand, 9760481 - 9760403
Alignment:
Q  382 ttttcataagttatccaatattatttagaaaaacaacttatagcatattgaaaaacaatcta--gttattttatctttt 458  Q
    |||||||||||| ||||||||   ||| ||||||||||||||||||||| ||||| ||| ||   ||||||||||||||    
T  9760481 ttttcataagttctccaatatagcttataaaaacaacttatagcatattaaaaaagaatttaactttattttatctttt 9760403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 45387238 - 45387321
Alignment:
Q  157 tctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactctaa 240  Q
    |||||||||||| | ||||||| || | || |||||  ||||||||||||||||||||||   || ||||||||| ||||||||    
T  45387238 tctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttacattgatgatgtatcaaaattgaactctaa 45387321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 53294143 - 53294201
Alignment:
Q  382 ttttcataagttatccaatattatttagaaaaacaacttatagcatattgaaaaacaat 440  Q
    |||||||||||| || |||||  |||| ||||||||||||||||||||  |||||||||    
T  53294143 ttttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaat 53294201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 387
Target Start/End: Original strand, 25904137 - 25904246
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    |||||||||| | ||| ||||| | |||||||| | || ||||| || |||||||||||||||||||   |||||||||||||| |  || |||| ||||    
T  25904137 gggcctgttttggttgacttatttgagcttatccaatgacataaattttgtgagactgtttgggagagcttatgaaaacagcttatgccatttttcataa 25904236  T
Q  378 gattttttca 387  Q
    | ||||||||    
T  25904237 gcttttttca 25904246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 35571543 - 35571612
Alignment:
Q  277 tagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||| |||||||||||||||||| | |||||||||| | ||||||||| |||| ||  |||||||||||    
T  35571543 tagggtctgtttggattggcttatttgagcttatctactagcataagttttgtgggatagtttgggagaa 35571612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 49940120 - 49940164
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||| |||||||||||||| |||||  ||||||||||||||    
T  49940120 cataagttttgtgagactgtttgagagaacttatgaaaacagctt 49940164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 50681044 - 50681112
Alignment:
Q  319 taagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||| |||||||||||||| |||||  ||||||||||| |  | |||||||| ||||| ||||||||    
T  50681044 taagttttgtgagactgtttgagagaacttatgaaaacagttaatgacaattttcataagcttttttca 50681112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 55302404 - 55302296
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||| ||||| |||||| | |||||||||| ||||||||||| |||||| |||||  ||| ||  |||  ||||||||| | ||||||||  ||||    
T  55302404 ggcctgttaggatttgcttattttagcttatctaatggcataagttttgtgagcctgttccggaaaacttatagaaacagcttatgacaattttcgtaag 55302305  T
Q  379 attttttca 387  Q
     ||||||||    
T  55302304 cttttttca 55302296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 2295251 - 2295152
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||||| |||||||||| | |||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||| | |||||||| |||||    
T  2295251 ggcctgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaattttcataag 2295152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 361
Target Start/End: Complemental strand, 38247489 - 38247400
Alignment:
Q  273 tacttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||||||||| |||| | | |||||||| ||||||||||| ||||  ||||||||||||||  ||||||||||||||    
T  38247489 tacttagggcctgtttggattgggttatttgaacttatctactggcataagttttgtgtcactgtttgggagaacttatgaaaacagctt 38247400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 41187346 - 41187435
Alignment:
Q  148 ataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    |||||||||||||||||||||||||| ||   ||   || |||||| |||||||||||||||||||||||| | ||| ||||||||||||    
T  41187346 ataacaacttctaaagtcatacacataataagttgcgatatgttgaaagtgtaaaacattttacattgacattacatgaaaattaaactc 41187435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 387
Target Start/End: Original strand, 43230687 - 43230793
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    ||||||||||||||||| ||| | ||||| |||| ||||||||||| |  |||| ||||| ||||||| |||||||||||||||  ||| ||||||||||    
T  43230687 ggcctgtttggattggcatatttgagcttctctactggcataagttttacgagattgtttaggagaatttatgaaaacagcttg--acagtttttataag 43230784  T
Q  379 attttttca 387  Q
     ||||||||    
T  43230785 cttttttca 43230793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 386
Target Start/End: Original strand, 3233933 - 3234037
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatt 381  Q
    |||||||||||| ||||| | |||||||||| || | |||||| |||||||||||| |||||||  |||||||||| ||| ||||| |||| ||||| ||    
T  3233933 ctgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaacttataacagttttcataagttt 3234032  T
Q  382 ttttc 386  Q
    |||||    
T  3234033 ttttc 3234037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 387
Target Start/End: Complemental strand, 473317 - 473211
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataaga 379  Q
    |||||||| ||||||||||| | ||| |||||| ||||||||||||||||| ||  ||||||||||  |||||||| ||||| | |||||||| |||||     
T  473317 gcctgtttagattggcttatttgagcctatctactggcataagttctgtgaaacattttgggagaacttatgaaaaaagcttat-acaattttcataagc 473219  T
Q  380 ttttttca 387  Q
    ||||||||    
T  473218 ttttttca 473211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 37617384 - 37617479
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    ||||||||||| ||||| | || |||||||||| | |||||| |||||||||||||| |||||| |||||||||||||| | |||| ||| |||||    
T  37617384 tgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaacagcttttgacaaatttcataag 37617479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 354
Target Start/End: Complemental strand, 2778040 - 2777971
Alignment:
Q  286 tttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaa 354  Q
    ||||||||||||||| | |||||||||||| ||||||||| ||||||||||||| ||||||  |||||||    
T  2778040 tttggattggcttattttagcttatctatttgcataagttttgtgagactgtttaggagaacttatgaaa 2777971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 49938867 - 49938794
Alignment:
Q  314 tggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||| ||||||| ||||||||||||  |||||||||||||| | |||||||| | ||| ||||||||    
T  49938867 tggcataagttttgtgagattgtttgggagaacttatgaaaacagcttatgacaattttcaaaagcttttttca 49938794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 51929497 - 51929562
Alignment:
Q  322 gttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||| |||||||||||||  ||||||||||||| | |||||||| ||||| ||||||||    
T  51929497 gttctgtgagattgtttgggagaattcatgaaaacagcttatgacaattttcataagcttttttca 51929562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 387
Target Start/End: Original strand, 14576569 - 14576677
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    ||||||||||||||||||||| | |||||||||| |||| ||| || ||||  ||||||||||| ||  | |||||||||||| | |||||||| | |||    
T  14576569 ggcctgtttggattggcttatttgagcttatctactggcttaaattttgtggcactgtttgggacaacttgtgaaaacagcttatgacaattttcaaaag 14576668  T
Q  379 attttttca 387  Q
     ||||||||    
T  14576669 cttttttca 14576677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 33186462 - 33186367
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaattttt 373  Q
    |||||||||||||||||||||| | || |||||  |||||||||||| ||||||||||| | ||||||  ||||||||| | || | |||||||||    
T  33186462 gggcctgtttggattggcttatttgagtttatccgttggcataagttttgtgagactgtctaggagaacttatgaaaactggttatgacaattttt 33186367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 5721074 - 5720988
Alignment:
Q  286 tttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaattt 371  Q
    ||||||||||||||| | |||||| ||| | ||||||||| |||  |||||||||||||||  |||||||||||||| | |||||||    
T  5721074 tttggattggcttatttgagcttaactacttgcataagttttgttggactgtttgggagaacttatgaaaacagcttatgacaattt 5720988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 16979630 - 16979580
Alignment:
Q  188 tgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactct 238  Q
    ||||||||||||||| | ||||||| |||||||| ||||||||||||||||    
T  16979630 tgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactct 16979580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 2181926 - 2181793
Alignment:
Q  103 aatcaatcataattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaa 202  Q
    ||||||||||||  ||||| |||||||||  || ||| |||||||||||  ||| ||||||| | | ||||||||| || |  || ||||||||||||||    
T  2181926 aatcaatcataacagtcaaatcattagaataatttgatttttatcataatcactactaaagtaacatacatgattggttgtgttgggttgacagtgtaaa 2181827  T
Q  203 acattttacattgacagtgcatcaaaattaaact 236  Q
    |  ||| ||| ||||| ||| | |||||||||||    
T  2181826 aggtttaacaatgacaatgcgtgaaaattaaact 2181793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 4274444 - 4274493
Alignment:
Q  188 tgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    |||||| |||||||||||| ||||||||| | ||||||||||||||||||    
T  4274444 tgttgatagtgtaaaacatcttacattgataatgcatcaaaattaaactc 4274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 34795354 - 34795443
Alignment:
Q  273 tacttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||| |||||||||||||||||| |||| | ||||   ||| |||||||| || || |||||||||||||||||  ||||||||||||||    
T  34795354 tactaagggcctgtttggattgggttatttgagctagcctactggcataaattttgcgagactgtttgggagaacttatgaaaacagctt 34795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 36872887 - 36872806
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaac 356  Q
    ||||||||||||||||||||||||| | |||||| |||    |||||||| || |||||||||| ||||||| |||||||||    
T  36872887 ttagggcctgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaatttatgaaaac 36872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 2295348 - 2295280
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||||||||| | |||||||||| || | |||||| | ||||||| ||||||||||    
T  2295348 agggcctgtttggattggcttatttgagcttatctactgacttaagttttctgagactatttgggagaa 2295280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 14385702 - 14385774
Alignment:
Q  274 acttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||| ||||||||| |||||||||||| | |||||||||| |||||||||||  |||||||| ||| ||||||    
T  14385702 acttggggcctgttcggattggcttatttgagcttatctactggcataagtttcgtgagactattttggagaa 14385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 29904882 - 29904798
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||||||| | ||||||||| |||||||||||||| |||||  ||| |||||||||| |  ||||||| | ||| ||||||||    
T  29904882 agcttatctacttgcataagttttgtgagactgtttgagagaacttataaaaacagcttatggcaattttcaaaagcttttttca 29904798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 34952359 - 34952291
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||| |||||||||||||||||| | |||||||||||||| ||||| | ||||||| | ||||||||||    
T  34952359 agggtctgtttggattggcttatttgagcttatctattgggataagatttgtgagattatttgggagaa 34952291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 38001712 - 38001668
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||    
T  38001712 cataagttttgtgagactgtttgggagaacttatgaaaacagctt 38001668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 3131679 - 3131746
Alignment:
Q  137 tgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaac 204  Q
    |||||||||||||||| ||||  ||||||| ||||||||||| || |||| ||  |||||||||||||    
T  3131679 tgacttttatcataactactttcaaagtcacacacatgattgtttgtaatatgccgacagtgtaaaac 3131746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 15477710 - 15477655
Alignment:
Q  278 agggcctgtttggattggctta-tatagcttatctattggcataagttctgtgaga 332  Q
    |||||||||||||||||||||| || |||||||||| | ||||||||| |||||||    
T  15477710 agggcctgtttggattggcttattagagcttatctacttgcataagttttgtgaga 15477655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 42174896 - 42174849
Alignment:
Q  382 ttttcataagttatccaatattatttagaaaaacaacttatagcatat 429  Q
    |||||||||||| |||||||| | ||| ||||||||||||||||||||    
T  42174896 ttttcataagttctccaatataacttataaaaacaacttatagcatat 42174849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 3234044 - 3234102
Alignment:
Q  382 ttttcataagttatccaatattatttagaaaaacaacttatagcatattgaaaaacaat 440  Q
    |||||||||||| ||||||||   ||| ||||||||||||||||||||  |||||||||    
T  3234044 ttttcataagttctccaatatagcttataaaaacaacttatagcatatacaaaaacaat 3234102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 237
Target Start/End: Complemental strand, 3242173 - 3242091
Alignment:
Q  155 cttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    |||||||||||| ||| | ||||| |||| || || | ||||||| |||||||||||| |||  ||| |||||||||||||||    
T  3242173 cttctaaagtcagacataagattggttatgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 3242091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 33204333 - 33204375
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  33204333 agcttatctactgacataagttttgtgagactgtttgggagaa 33204375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 50644174 - 50644248
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    ||||||||||| ||||| | |||||||||| |  |||| ||| ||||||||||||||||||||  ||||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaaca 50644248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 4445815 - 4445774
Alignment:
Q  326 tgtgagactgtttgggagaatgtatgaaaacagcttgtaaca 367  Q
    ||||||||||||||||||||| ||||||| |||||| |||||    
T  4445815 tgtgagactgtttgggagaatttatgaaagcagcttataaca 4445774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 28287958 - 28287893
Alignment:
Q  276 ttagggcctgtttggattggctta-tatagcttatctattggcataagttctgtgagactgtttgg 340  Q
    ||||| |||||||||||||||||| || || |||| |||||||||||| | ||||||||| |||||    
T  28287958 ttaggacctgtttggattggcttattagagtttatatattggcataagctttgtgagactatttgg 28287893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 7941719 - 7941679
Alignment:
Q  321 agttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||| ||||||||||||||| ||||| ||||||||||||||    
T  7941719 agttttgtgagactgtttggaagaatttatgaaaacagctt 7941679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 9572054 - 9572098
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||| | ||||||||||||||||||||  ||||||||||||||    
T  9572054 cataagatttgtgagactgtttgggagaacttatgaaaacagctt 9572098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 10231913 - 10231797
Alignment:
Q  123 tcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgc 222  Q
    |||||| || ||| |||||||||||||||| | ||||||| ||| ||| |||||||||| |||| ||| ||||||||||||| ||||||| ||||| |      
T  10231913 tcattaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgtaatatgtggacagtgtaaaactttttacactgacaatat 10231814  T
Q  223 atcaaaattaaactcta 239  Q
    |||||||||||||||||    
T  10231813 atcaaaattaaactcta 10231797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 276 - 428
Target Start/End: Complemental strand, 30331910 - 30331755
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaattttta 374  Q
    ||||||| ||||||||||| ||||| | |||||||||| || |||||||| ||||||||||||||||||||  |||||||| | ||| | |||||||| |    
T  30331910 ttagggcttgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaaaaccttatgacaattttca 30331811  T
Q  375 taagatt--ttttcataagttatccaatattatttagaaaaacaacttatagcata 428  Q
     ||| ||  |||||||||||| ||||||||   ||| ||||| | |||||||||||    
T  30331810 caagctttattttcataagttctccaatatatcttataaaaatagcttatagcata 30331755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 15305835 - 15305721
Alignment:
Q  274 acttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||| ||||||||| ||||  | ||| |||| ||| |  |||||||    
T  15305835 acttagggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaacttttgacaacaacttatggcaatttt 15305736  T
Q  373 tataagattttttca 387  Q
     ||||| ||||||||    
T  15305735 cataagtttttttca 15305721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 43279460 - 43279552
Alignment:
Q  297 ttatatagcttatctattggcataagttctgtgagactgtttgg--gagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||| ||||||||||| | ||||||||| |||||||||||||||  |||||| |||||||||||||| | |||||||| ||||| ||||||||    
T  43279460 ttatttagcttatctactagcataagttttgtgagactgtttgggagagaatttatgaaaacagcttatgacaattttcataagcttttttca 43279552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 361
Target Start/End: Original strand, 42659122 - 42659208
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||| ||||||||| ||||||||| | ||||||| || ||||||||||| ||||||||||||||||||||  | ||||||||||||    
T  42659122 ttaggacctgtttgggttggcttatttgagcttatttactggcataagttttgtgagactgtttgggagaagttttgaaaacagctt 42659208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 2097512 - 2097380
Alignment:
Q  105 tcaatcataattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaac 204  Q
    ||||||||||| || | ||||||| || ||| | |||||| |||||||  ||||| |||||| ||||||||||| || | ||||||| | ||| ||||||    
T  2097512 tcaatcataatcgttaggtcattataaacattttacttttttcataaccgcttctgaagtcacacacatgattgcttgtgatgtgttcatagtataaaac 2097413  T
Q  205 attttacattgacagtgcatcaaaattaaactc 237  Q
    |||||||| |||||||  || ||| ||||||||    
T  2097412 attttacactgacagtctatgaaatttaaactc 2097380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 7928211 - 7928271
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtt 337  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||    
T  7928211 agggcctgtttggattggcttatttgagcttatctattgacataagttgtgtgagactgtt 7928271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 15757597 - 15757681
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||| || ||||||||||| |||||||||| |||||||||| ||||||||| |||| | |||||||| | ||| ||||||||    
T  15757597 agcttatttactggcataagttttgtgagactgcttgggagaatttatgaaaactgcttatgacaattttcagaagcttttttca 15757681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 383
Target Start/End: Complemental strand, 32592744 - 32592637
Alignment:
Q  279 gggcctgtttggattggcttatat---agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttat 375  Q
    ||||||||||||||||||||||||   |||||||||  ||||||||||| || ||| || ||||||||||  |||||||| |||||   |||||||| ||    
T  32592744 gggcctgtttggattggcttatatttaagcttatctgatggcataagttttgggagtctatttgggagaacttatgaaaatagcttacgacaattttcat 32592645  T
Q  376 aagatttt 383  Q
    ||| ||||    
T  32592644 aagctttt 32592637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 42868393 - 42868462
Alignment:
Q  277 tagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||||||||||||||| ||||| | |||||||||||||||||| |||  |||| ||||||||||||||    
T  42868393 tagggcctgtttggattgccttatttgagcttatctattggcatacgtttcgtgacactgtttgggagaa 42868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 11864061 - 11863990
Alignment:
Q  274 acttagggcctgtttggattggcttatatag-cttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||||||||||||| | | ||||| || |||| |||| ||||||||||||||||||||||    
T  11864061 acttagggcctgtttggattggcttatttggtcttatttactggc-taaggtctgtgagactgtttgggagaa 11863990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 237
Target Start/End: Complemental strand, 35991359 - 35991276
Alignment:
Q  154 acttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    |||| |||| ||| ||||||| |||||||| || || |  ||||||||||| |||||||||||||||| || ||||||||||||    
T  35991359 acttgtaaaatcacacacatgcttgattatgatttgctatcagtgtaaaactttttacattgacagtgtattaaaattaaactc 35991276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 3312234 - 3312165
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaat 346  Q
    ||||| ||||||||||||||||| | |||||||||| || | |||||| |||||||||||| ||||||||    
T  3312234 agggcttgtttggattggcttatttgagcttatctactgacgtaagttttgtgagactgttggggagaat 3312165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 9174946 - 9174910
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttg 339  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9174946 agcttatctattggcataagttatgtgagactgtttg 9174910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 32837453 - 32837389
Alignment:
Q  304 gcttatctattggcataagttct-gtgagactgtttgggagaatgtatgaaaacagcttgtaaca 367  Q
    ||||||||| ||| |||||| || |||||||||||||||||||  |||||||||||||| |||||    
T  32837453 gcttatctagtggtataagtacttgtgagactgtttgggagaacttatgaaaacagcttataaca 32837389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 41851666 - 41851586
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttt 383  Q
    ||||||||||||| || ||||| |||||||||| |||||||||| |||| ||||| ||| | ||| |||| ||||| ||||    
T  41851666 agcttatctattgacaaaagttttgtgagactgattgggagaatttatggaaacaacttatgacacttttcataagctttt 41851586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 26202189 - 26202075
Alignment:
Q  274 acttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||||||||||||||||||  ||||| | | |||||||  || |||||||| ||||||| | ||||  ||||| ||||| |||| ||| | ||||||||    
T  26202189 acttagggcctgtttggattaacttatttgaacttatctgctgacataagttttgtgagattctttgctagaatttatgagaacaacttatgacaatttt 26202090  T
Q  373 tataagattttttca 387  Q
     ||||| ||||||||    
T  26202089 cataagcttttttca 26202075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 361
Target Start/End: Complemental strand, 31744453 - 31744371
Alignment:
Q  280 ggcctgtttggattggcttatatag-cttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||||||| | | ||||||||  | |||||||| | |||||||||||| |||||  | ||||||||||||    
T  31744453 ggcctgtttggattggcttatttgggcttatctaccgacataagttttctgagactgtttgagagaacttttgaaaacagctt 31744371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 41812005 - 41812115
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttata 376  Q
    ||||| ||||||||||||||||| | |||||||||   | || |||||  ||||| |||||||||||||  | |||||||||||| | ||| |||| |||    
T  41812005 agggcttgtttggattggcttatttgagcttatctgcagtcaaaagtttagtgaggctgtttgggagaacttttgaaaacagcttatgacatttttcata 41812104  T
Q  377 agattttttca 387  Q
    || ||||||||    
T  41812105 agcttttttca 41812115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 27317025 - 27317082
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttg 339  Q
    |||||||||||| ||||| | |||||||||||||||||||| | ||||| ||||||||    
T  27317025 ctgtttggattgacttattttagcttatctattggcataagctttgtgacactgtttg 27317082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 27317533 - 27317456
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    |||||||||||||| ||||| | ||||||||||  | |||||||| | |||||||||||| |||||  ||||||||||    
T  27317533 gcctgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaaca 27317456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 29933510 - 29933559
Alignment:
Q  188 tgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactc 237  Q
    ||||||||||||||||||||||| ||| |||||| |||||| | ||||||    
T  29933510 tgttgacagtgtaaaacattttaaattaacagtgtatcaaattaaaactc 29933559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 33319737 - 33319795
Alignment:
Q  286 tttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||| | ||||| |||| |||||||||||  |||||||||||||||||||    
T  33319737 tttggattggcttatttgagcttgtctactggcataagtt--gtgagactgtttgggagaa 33319795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 41733989 - 41734034
Alignment:
Q  188 tgttgacagtgtaaaacattttacattgacagtgcatcaaaattaa 233  Q
    |||||| |||||||||| ||||| |||||||||| |||||||||||    
T  41733989 tgttgatagtgtaaaactttttaaattgacagtgtatcaaaattaa 41734034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 361
Target Start/End: Complemental strand, 44590178 - 44590097
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||| ||||||||||||||| | || |||||||| | |||||||| |||||||| |||||  ||||  ||||||||||||||    
T  44590178 gcctctttggattggcttatttgagtttatctatagacataagttttgtgagaccgtttgaaagaacttatgaaaacagctt 44590097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 4607082 - 4607014
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||||||||| | ||||||||||     ||||||| ||||||||| ||||||||||    
T  4607082 agggcctgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaa 4607014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 13166084 - 13166144
Alignment:
Q  103 aatcaatcataattgtcaagtcattagaagcatctgacttttatcataacaacttctaaag 163  Q
    ||||||| |||| |||||| || |||||| ||| |||||||||||||||  ||||||||||    
T  13166084 aatcaataataactgtcaaatcgttagaaacatttgacttttatcataatcacttctaaag 13166144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 15370238 - 15370302
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataag-ttctgtgagactgtttggga 342  Q
    ||||||||||||||| ||||| | |||||||||| |||||||||  | |||||||||||||||||    
T  15370238 ggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 16451239 - 16451195
Alignment:
Q  313 ttggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    |||| |||||||||||||||| |||||||||||  ||||||||||    
T  16451239 ttggaataagttctgtgagaccgtttgggagaacttatgaaaaca 16451195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 24101045 - 24100977
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttttt 385  Q
    |||||||| ||||||||||||||||||||  |||| ||||| ||| | ||||| || ||||| ||||||    
T  24101045 cataagttttgtgagactgtttgggagaacttatggaaacaccttatgacaatattcataagctttttt 24100977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 36125487 - 36125434
Alignment:
Q  306 ttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||| ||||||||||||||||||| ||||   |||||| ||||||||||||||    
T  36125487 ttatctactggcataagttctgtgagagtgtt--agagaatatatgaaaacagctt 36125434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 36534885 - 36534841
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||| ||||||||||||||||| ||  ||||||||||||||    
T  36534885 cataagttttgtgagactgtttgggataacttatgaaaacagctt 36534841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 43529776 - 43529856
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctg-tgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||| |||| ||||| | |||||||||||||| |||||  ||  ||| ||||||||||||||| ||||||||||||||    
T  43529776 ctgtttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagctt 43529856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 43717843 - 43717928
Alignment:
Q  274 acttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacag 358  Q
    ||||||||||| ||||||||||||||| | ||||||||||||| |||||||| ||||||||| ||||||||||  |||||||||||    
T  43717843 acttagggcctatttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaacag 43717928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 387
Target Start/End: Original strand, 43045641 - 43045748
Alignment:
Q  281 gcctgtttggattggcttatata-gcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataaga 379  Q
    |||||||||||||||||||| || ||||||||| | ||||||| | ||||||||||||| |||||   ||||||||||||||  ||||||||| |||||     
T  43045641 gcctgtttggattggcttatttaagcttatctactagcataagatttgtgagactgttttggagatcttatgaaaacagcttacaacaattttaataagc 43045740  T
Q  380 ttttttca 387  Q
    ||||||||    
T  43045741 ttttttca 43045748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 28763498 - 28763417
Alignment:
Q  304 gcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttttt 385  Q
    ||||||||| |  |||||||| ||||||||||||||||||||  |||||||||||||| |||||||||| ||||| ||||||    
T  28763498 gcttatctagtaacataagttttgtgagactgtttgggagaacttatgaaaacagcttataacaattttcataagctttttt 28763417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 30251367 - 30251451
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||  |||||||||||||||||||  || |||||||||||    
T  30251367 agggcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagctt 30251451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 35643900 - 35644011
Alignment:
Q  277 tagggcctgtttggattggcttatatag-cttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttat 375  Q
    ||||||||||| |||||||||||| | | |||||||| |||||||| || ||||||||||||||||| ||  |||||||| || || | |||||||| ||    
T  35643900 tagggcctgttgggattggcttatttgggcttatctactggcataatttttgtgagactgtttgggataacttatgaaaatagtttatgacaattttcat 35643999  T
Q  376 aagattttttca 387  Q
    ||| ||||||||    
T  35644000 aagcttttttca 35644011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 36963272 - 36963362
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    |||||||||||||||||| | |||| ||||| ||||||||||| ||||||||||||||||||||  ||  |||||||||| | ||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaacagcttttgacaatttt 36963362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 26771396 - 26771327
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||||||||  |||||||||| ||||||||||||||||||||  |||||||||||||| | ||||||||    
T  26771396 agcttatctacgggcataagttttgtgagactgtttgggagaacttatgaaaacagcttatgacaatttt 26771327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 38648506 - 38648425
Alignment:
Q  280 ggcctgtttggattggcttatata-gcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagct 360  Q
    |||||||| |||||||||||| || | ||||||| || |||||||| |||||||||||||||||||   |||||||||||||    
T  38648506 ggcctgttaggattggcttatttaagattatctactgacataagttttgtgagactgtttgggagaccttatgaaaacagct 38648425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 35749509 - 35749593
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||||| |||||||| || ||| ||||||| |||||  ||||||||||||||||| || |||| ||||  ||||||||    
T  35749509 agcttatctattgacataagttttgcgaggctgtttgagagaacttatgaaaacagcttgtagcatttttcataaacttttttca 35749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 38602483 - 38602416
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||||||||||||| ||||| | |||||||||| || |||||||| |||||| |||||||||||||    
T  38602483 gggcctgtttggattgacttatttgagcttatctactgacataagttttgtgaggctgtttgggagaa 38602416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 10758210 - 10758280
Alignment:
Q  317 cataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    |||||||| ||||||||||||||  ||||| |||||||||||||| | |||||||| | ||| ||||||||    
T  10758210 cataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttcaaaagcttttttca 10758280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 18133801 - 18133703
Alignment:
Q  290 gattggcttatata-gcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||| || ||||||||| | | ||||||| |||||||||||||||||||   | ||||| |||||| |||||||||| | ||| ||||||||    
T  18133801 gattggcttatttaagcttatctactagtataagttttgtgagactgtttgggagagcttgtgaaatcagcttataacaattttcacaagcttttttca 18133703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 12976360 - 12976259
Alignment:
Q  287 ttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagatttttt 385  Q
    |||| ||||||||| | |||||||||| | ||||||| | ||||||||||||| | ||||  ||||| |||||||| |||||||||| | ||| ||||||    
T  12976360 ttggtttggcttatttgagcttatctactagcataaggtttgtgagactgtttagtagaacttatgagaacagcttctaacaattttcaaaagctttttt 12976261  T
Q  386 ca 387  Q
    ||    
T  12976260 ca 12976259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 360
Target Start/End: Complemental strand, 6882083 - 6882001
Alignment:
Q  276 ttagggcctgtttggattggcttatatagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagct 360  Q
    ||||||| ||||||||||||||||| || || |  ||| | |||||||| ||||||||||||||||||||  |||||||||||||    
T  6882083 ttagggcttgtttggattggcttatcta-ctgacatat-gacataagttttgtgagactgtttgggagaacctatgaaaacagct 6882001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 35534527 - 35534635
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    |||||||||| || || ||||| | |||||||||| |  |||||||| |||||||||||||| |||||  | |||||||||||| | |||||||| | ||    
T  35534527 gggcctgtttagaatgacttatttgagcttatctactaacataagttttgtgagactgtttgagagaacttgtgaaaacagcttatgacaattttaacaa 35534626  T
Q  378 gattttttc 386  Q
    | |||||||    
T  35534627 gcttttttc 35534635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 9130238 - 9130297
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttggga 342  Q
    |||||||||| |||||| | |||||||||| ||||||||||| ||||||||| |||||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcataagttttgtgagactatttggga 9130297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 30011784 - 30011717
Alignment:
Q  145 atcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttaca 212  Q
    |||||||| ||||||||| ||| ||| |||||||||| | || ||||||||||||||||  |||||||    
T  30011784 atcataactacttctaaaatcacacatatgattgattttgatttgttgacagtgtaaaatgttttaca 30011717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 18591915 - 18591957
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||||||||||| ||||||| | ||||||||||||||||||    
T  18591915 agcttatctattggtataagttttatgagactgtttgggagaa 18591957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 24827287 - 24827333
Alignment:
Q  188 tgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaa 234  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||    
T  24827287 tgttgacaatgtaaaacattttacattgacaaagtatcaaaattaaa 24827333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 40859703 - 40859796
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||||||||||| | |||||||||  |  |||||||| |||||| |||||| ||||| | |||||||||||||| | |||||||| |||||    
T  40859703 gtttggattggcttatttgagcttatctgctaacataagttttgtgaggctgttttggagact-tatgaaaacagcttatgacaattttcataag 40859796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 44792807 - 44792745
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||||||| | |||||||||| ||| |||| || ||||||||||||| ||||||    
T  44792807 tgtttggattggcttatttgagcttatctactgggataaattatgtgagactgttttggagaa 44792745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 372
Target Start/End: Complemental strand, 15180698 - 15180602
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||| ||||||||||||||||||| | || ||||||| || |||||||| | ||||||| ||| ||||||| | ||||||||| || | ||||||||    
T  15180698 ttaggacctgtttggattggcttatttgagtttatctactgccataagttttatgagact-ttttggagaatttctgaaaacaggttttgacaatttt 15180602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 26762887 - 26762990
Alignment:
Q  137 tgacttttatcataacaacttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaaca---ttttacattgacagtgcatcaaaattaa 233  Q
    ||||||| |||||||  ||||||||||||||||| |||||||||| | || | |||| | |||| ||||   | ||||| |||||||| ||||| |||||    
T  26762887 tgactttaatcataattacttctaaagtcatacaaatgattgattgtgattttttgaaaatgtagaacatgttattacactgacagtgtatcaacattaa 26762986  T
Q  234 actc 237  Q
    ||||    
T  26762987 actc 26762990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 29705914 - 29705947
Alignment:
Q  137 tgacttttatcataacaacttctaaagtcataca 170  Q
    |||||||||||||||| |||||||||||||||||    
T  29705914 tgacttttatcataaccacttctaaagtcataca 29705947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 29818857 - 29818926
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaat 346  Q
    ||||| ||||||||||||| ||| | |||||||||| |  |||||||| ||||||||||||| |||||||    
T  29818857 agggcatgtttggattggcatatttgagcttatctactatcataagttttgtgagactgtttcggagaat 29818926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 12496985 - 12497053
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||| |||||||||  |||| | |||||||||  ||||||||||| |||||||||||||| |||||    
T  12496985 agggcctatttggattgatttatttgagcttatctcctggcataagttttgtgagactgtttgagagaa 12497053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 27754535 - 27754479
Alignment:
Q  302 tagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacag 358  Q
    |||||||| ||||  |||||||| ||||||||| ||||||||||  |||||||||||    
T  27754535 tagcttatttattatcataagttttgtgagactatttgggagaacttatgaaaacag 27754479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 31716166 - 31716250
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||||||||||||||||  || | ||||||||||| ||||||  | |||||||||||| | ||| | || ||||| ||||||||    
T  31716166 agcttatctattggcatattttttttgagactgtttcggagaacttttgaaaacagcttatgacattcttcataagcttttttca 31716250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 387
Target Start/End: Original strand, 16937800 - 16937906
Alignment:
Q  282 cctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagat 380  Q
    ||||||||||||||||||| | |||||||||| | ||||||||| ||||||| ||||||| ||||  |||||||||||||| | |||| ||| ||||| |    
T  16937800 cctgtttggattggcttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgacaaatttcataagct 16937899  T
Q  381 tttttca 387  Q
    |||||||    
T  16937900 tttttca 16937906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 34102222 - 34102310
Alignment:
Q  274 acttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||||||| |  ||||| | |||||| ||||||||||||||| ||||| |||||||||| |||| |||||||| |||||    
T  34102222 acttagggcctgtttggaatcacttatttgagcttaactattggcataagttttgtgacactgtttgggggaatttatgaaaatagctt 34102310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 361
Target Start/End: Original strand, 12433079 - 12433170
Alignment:
Q  271 catacttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||| ||||||||||||||||||||||| | | ||||| || ||||||| ||| ||||||| ||||||||||||  |||||||| |||||    
T  12433079 catactaagggcctgtttggattggcttatttgaacttatttactggcataggttttgtgagattgtttgggagaagttatgaaaatagctt 12433170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 384
Target Start/End: Complemental strand, 10640109 - 10640003
Alignment:
Q  279 gggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataa 377  Q
    ||||||||||||||| |||||| | || ||||||| || |||||||| ||||| | ||||||||||||  |||||||||||||| | ||| |||| ||||    
T  10640109 gggcctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacatttttcataa 10640010  T
Q  378 gattttt 384  Q
    | |||||    
T  10640009 gcttttt 10640003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 32942748 - 32942650
Alignment:
Q  281 gcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||||||||| ||||||  ||||| |||| || |||||||| |||  |||||||||||||||| |||||| ||||||| | ||| |||| |||||    
T  32942748 gcctgtttggattgacttatacgagcttttctactgacataagttttgtttgactgtttgggagaatttatgaatacagcttatgacatttttcataag 32942650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 359
Target Start/End: Complemental strand, 43301035 - 43300953
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagc 359  Q
    ||||| ||||||||||||||||| | ||||||| || ||||||||||| | |||||||||| |||||||  ||| ||||||||    
T  43301035 agggcatgtttggattggcttatttgagcttatataatggcataagttttatgagactgttggggagaagttataaaaacagc 43300953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 16458036 - 16458093
Alignment:
Q  410 aaaaacaacttatagcatattgaaaaacaatct-agttattttatcttttgttataaa 466  Q
    ||||||||||||||||||||  ||||||||| | ||||||||||||||||| ||||||    
T  16458036 aaaaacaacttatagcatatacaaaaacaatttaagttattttatcttttgctataaa 16458093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 32941622 - 32941545
Alignment:
Q  283 ctgtttggattggcttat-atagctt-atctattggcataagttctgtgagactgtttgggagaatgtatgaaaacag 358  Q
    |||||||||||| ||||| | ||||| ||||| || ||||||||||||||||| |||||||||||  |||||||||||    
T  32941622 ctgtttggattgacttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaacag 32941545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 43051618 - 43051535
Alignment:
Q  154 acttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactcta 239  Q
    ||||||||||||||||  |||| |||||   || ||||||||||||||||| |||||||||||| | | |||||||||||||||||    
T  43051618 acttctaaagtcatacctatgaatgattgcgat-tgttgacagtgtaaaac-ttttacattgactgcgtatcaaaattaaactcta 43051535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 1773024 - 1773101
Alignment:
Q  283 ctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||||||| | |||||||||| |  |||||||| ||||||||||  ||||||||  ||||||||||||||    
T  1773024 ctgtttggattggcttattttagcttatctacttccataagttttgtgagactg--tgggagaacttatgaaaacagctt 1773101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 7705911 - 7705995
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||| ||||| | ||| |||||| | ||||||||| |||||  || ||||||||||  ||||||||||||||    
T  7705911 agggcctgtttggattgacttatttgagcatatctactagcataagttttgtgacgctctttgggagaacttatgaaaacagctt 7705995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 7705316 - 7705379
Alignment:
Q  103 aatcaatcataattgtcaagtcattagaagcatctgacttttatcataacaacttctaaagtca 166  Q
    ||||||||||||  |||| |||||| ||| ||| |||||||||||||||| |||| ||||||||    
T  7705316 aatcaatcataacagtcaggtcattggaaacatttgacttttatcataaccacttttaaagtca 7705379  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 16457935 - 16458002
Alignment:
Q  320 aagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataagattttttca 387  Q
    ||||| ||||||||||||||||||||  |||||||||||||| | ||| |||| ||||| | ||||||    
T  16457935 aagttttgtgagactgtttgggagaacttatgaaaacagcttatgacagttttcataagctcttttca 16458002  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 346
Target Start/End: Original strand, 25461559 - 25461629
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaat 346  Q
    |||||||| |||||||||||||||| | |||||||||||  ||||||||| ||||| ||||||||| |||||    
T  25461559 ttagggcccgtttggattggcttatttgagcttatctatcagcataagtt-tgtgatactgtttggtagaat 25461629  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 12425704 - 12425662
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  12425704 agcttatctactgtcataagttttgtgagactgtttgggagaa 12425662  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 387
Target Start/End: Original strand, 12857251 - 12857361
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttata 376  Q
    ||||| |||||||||||| |||| | ||||||||||||| | |||||| ||||| ||| ||  ||||||  |||||||||| ||| | |||||||| | |    
T  12857251 agggcttgtttggattggtttatttgagcttatctattgacgtaagttttgtgaaacttttccggagaacttatgaaaacaacttatgacaattttcaca 12857350  T
Q  377 agattttttca 387  Q
    || ||||||||    
T  12857351 agcttttttca 12857361  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 15015974 - 15015891
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgta-acaatttttataagattttttca 387  Q
    |||||||||| || |||||| | ||||||||||||||||||||  |||||||| |  ||| | |||||||| ||||||||||||||    
T  15015974 agcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaata--ttgaagacaattttcataagattttttca 15015891  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 16252643 - 16252685
Alignment:
Q  154 acttctaaagtcatacacatgattgattataatgtgttgacag 196  Q
    ||||||||||||| |||||||||||||| | ||||||||||||    
T  16252643 acttctaaagtcacacacatgattgattgtgatgtgttgacag 16252685  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 32372775 - 32372701
Alignment:
Q  272 atacttagggcctgtttggattggcttatatagc-ttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||| ||||| ||| || |||||||||| | || ||||||| ||||||||||| ||||||||||||||| ||||    
T  32372775 atactaagggcttgtatgtattggcttatttggccttatctactggcataagttttgtgagactgtttggaagaa 32372701  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 39248221 - 39248171
Alignment:
Q  311 tattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||| ||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  39248221 tattagcataagttttgtgagactgtttgggagaacttataaaaacagctt 39248171  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 41981644 - 41981698
Alignment:
Q  305 cttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagc 359  Q
    |||||||| | |||| |||| ||||||||||||||||||||  ||||||||||||    
T  41981644 cttatctactagcattagttttgtgagactgtttgggagaacttatgaaaacagc 41981698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 345
Target Start/End: Complemental strand, 42100466 - 42100400
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    ||||||||||||| ||||||| | ||||||||||||||||||| || |||| |||||| || |||||    
T  42100466 ggcctgtttggatgggcttatttgagcttatctattggcataaattttgtgtgactgtgtgagagaa 42100400  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 1464972 - 1465017
Alignment:
Q  316 gcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||| ||||||||| |||||||  ||||||||||||||    
T  1464972 gcataagttctgcgagactgttcgggagaacttatgaaaacagctt 1465017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 9107240 - 9107163
Alignment:
Q  285 gtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||| ||||| | || ||||||| || |||||||| ||||||| ||||||||||||   |||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtgagaatgtttgggagaactcatgaaaacagctt 9107163  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 34736439 - 34736508
Alignment:
Q  277 tagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaa 345  Q
    |||||| ||||||||||| ||||| | |||||||||  || |||||||| |||||||| |||||||||||    
T  34736439 tagggcatgtttggattgacttatttgagcttatctggtgacataagttttgtgagacagtttgggagaa 34736508  T

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Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 35445786 - 35445847
Alignment:
Q  306 ttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaaca 367  Q
    ||||||| || |||||||| ||||||||| ||||  ||||| |||||||||||||| |||||    
T  35445786 ttatctactgacataagttttgtgagactctttgacagaatttatgaaaacagcttataaca 35445847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 10992035 - 10992071
Alignment:
Q  196 gtgtaaaacattttacattgacagtgcatcaaaatta 232  Q
    |||||||| |||||||||| |||||||||||||||||    
T  10992035 gtgtaaaatattttacattaacagtgcatcaaaatta 10992071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 9559364 - 9559419
Alignment:
Q  306 ttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  9559364 ttatctattggcataagttttgtgagactgtttaggagaagttatgaaaacagctt 9559419  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 361
Target Start/End: Complemental strand, 6538672 - 6538587
Alignment:
Q  277 tagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||||||| ||||| | || |||| || |||||||||||  ||||||||||| ||||||||  |||||||||||||    
T  6538672 tagggcctgtttggattgtcttatttgagtttatgtagtggcataagtttggtgagactgttcgggagaattgatgaaaacagctt 6538587  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 387
Target Start/End: Complemental strand, 848147 - 848036
Alignment:
Q  276 ttagggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaattttta 374  Q
    ||||||||||||||||||| ||||| | ||||||||||| | |||||||| ||||||||||||||| ||||  ||| ||||| |||| | ||| ||||      
T  848147 ttagggcctgtttggattgccttatttgagcttatctatag-cataagttttgtgagactgtttggaagaacttataaaaactgcttatgacatttttct 848049  T
Q  375 taagattttttca 387  Q
    |||| ||||||||    
T  848048 taagcttttttca 848036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 4163304 - 4163212
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttat 375  Q
    ||||||||||||||||| | |||||||||| ||||||||||| |  ||||||||| | |||||  |||||||||| ||| | |||||||||||    
T  4163304 tgtttggattggcttatttgagcttatctactggcataagttttacgagactgttcgtgagaacctatgaaaacaacttatgacaatttttat 4163212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 4224925 - 4224833
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttat 375  Q
    ||||||||||||||||| | |||||||||| ||||||||||| |  ||||||||| | |||||  |||||||||| ||| | |||||||||||    
T  4224925 tgtttggattggcttatttgagcttatctactggcataagttttacgagactgttcgtgagaacctatgaaaacaacttatgacaatttttat 4224833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 33074895 - 33074949
Alignment:
Q  303 agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    ||||||||||||| ||| |||| |||||||||||| ||||||||| |||||||||    
T  33074895 agcttatctattgccatgagttttgtgagactgttggggagaatggatgaaaaca 33074949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 30536637 - 30536576
Alignment:
Q  300 tatagcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    ||||||||||||| |||| |||||| |||||||||||||||||| |  |||||||| |||||    
T  30536637 tatagcttatctactggcgtaagttttgtgagactgtttgggaggacttatgaaaatagctt 30536576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 10645304 - 10645378
Alignment:
Q  284 tgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaaca 357  Q
    |||||||||||||| || | || ||||||| || |||||||| ||| ||||||||||||||||  ||||||||||    
T  10645304 tgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaacttatgaaaaca 10645378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 30926674 - 30926581
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttt 372  Q
    ||||||||||| ||||||||| | ||||||| |  |||||||| ||   ||||||||||||| ||||  |||||||||||||| | ||||||||    
T  30926674 ggcctgtttggtttggcttatttgagcttattttctggcataaatttgatgagactgtttggaagaacttatgaaaacagcttatgacaatttt 30926581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 34009447 - 34009496
Alignment:
Q  311 tattggcataagttctgtgagactgtttgggagaatgtatgaaaacagct 360  Q
    |||||||||| | | |||||||| |||||||||||| |||||||||||||    
T  34009447 tattggcatatgatttgtgagacagtttgggagaatttatgaaaacagct 34009496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 35069525 - 35069585
Alignment:
Q  278 agggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtt 337  Q
    |||||||||||| |||||||||| | |||||||||| || |||||||| ||| ||||||||    
T  35069525 agggcctgtttgtattggcttatttgagcttatctactgacataagttttgtaagactgtt 35069585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 24748 - 24694
Alignment:
Q  307 tatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagctt 361  Q
    |||||||||||||| ||| ||||||||||||||||||||  ||| ||||||||||    
T  24748 tatctattggcatatgttttgtgagactgtttgggagaacttatcaaaacagctt 24694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 10587 - 10670
Alignment:
Q  154 acttctaaagtcatacacatgattgattataatgtgttgacagtgtaaaacattttacattgacagtgcatcaaaattaaactcta 239  Q
    ||||||||||||||||  |||| |||||   || |||||||||| |||||| |||||||||||| | | |||||||||||||||||    
T  10587 acttctaaagtcatacctatgaatgattgcgat-tgttgacagtataaaac-ttttacattgactgcgtatcaaaattaaactcta 10670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 387
Target Start/End: Complemental strand, 22386 - 22278
Alignment:
Q  280 ggcctgtttggattggcttatat-agcttatctattggcataagttctgtgagactgtttgggagaatgtatgaaaacagcttgtaacaatttttataag 378  Q
    |||||||| ||||| |||||| | |||||||||| ||||||||||| |||||| |||||  ||| ||  |||  ||||||||| | ||||||||  ||||    
T  22386 ggcctgttaggatttgcttattttagcttatctaatggcataagttttgtgagcctgttccggaaaacttatagaaacagcttatgacaattttcgtaag 22287  T
Q  379 attttttca 387  Q
     ||||||||    
T  22286 cttttttca 22278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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