View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_61 (Length: 234)
Name: NF1681_high_61
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_61 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8309425 - 8309643
Alignment:
| Q |
1 |
aaaatcaattttcaattaaatattcaatttcctaacctaaggctgaaggagctgcactacacattcacattgttttagtcatattttcagtacactattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8309425 |
aaaatcaattttcaattaaatattcaatttcctaacctaaggctgaaggagctgcactacacattcatattgttttagtcatattttcagtacactattt |
8309524 |
T |
|
| Q |
101 |
ttctatatagatccatctctaattacacccaaatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8309525 |
ttctatatagatccatctctaattacacccaaatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgat |
8309624 |
T |
|
| Q |
201 |
tgtaagattcgttatcttt |
219 |
Q |
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|
||||||| ||||||||||| |
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| T |
8309625 |
tgtaagaatcgttatcttt |
8309643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 8299918 - 8300056
Alignment:
| Q |
1 |
aaaatcaattttcaattaaatattcaatttcctaacctaaggc--tgaaggagctgcactacacattcacattgttttagtcatattttcagtacactat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8299918 |
aaaatcaattttcaattaaatattcaatttcctaacctaacgtcttgaaggagctgcactacacattcatattgttttagtcatattttcagtacacta- |
8300016 |
T |
|
| Q |
99 |
ttttctatatagatccatctctaattacacccaaatgttg |
138 |
Q |
| |
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||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
8300017 |
ttttctagatagatccatctttaattacacacaaatgttg |
8300056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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