View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681_high_65 (Length: 232)
Name: NF1681_high_65
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_65 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 39451357 - 39451144
Alignment:
| Q |
1 |
gagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39451357 |
gagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcgaggactccattttctcctcctccagta |
39451258 |
T |
|
| Q |
101 |
gtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451257 |
gtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaactt |
39451158 |
T |
|
| Q |
201 |
ctggaaggttgatg |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
39451157 |
ctggaaggttgatg |
39451144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 39475829 - 39475650
Alignment:
| Q |
35 |
atcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||| ||||| || |||| ||| |||||||||||| || || |||||||| || ||||||| |
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| T |
39475829 |
atcatggtggtgcagaacatgtcaacaacgaaggcggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtt |
39475730 |
T |
|
| Q |
135 |
tctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatg |
214 |
Q |
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| T |
39475729 |
tctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtttgggggaagagaaacttctggaaggttgatg |
39475650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 39486809 - 39486609
Alignment:
| Q |
14 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactcca---ttttctcctcctccagtagtgaggttag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || |||| ||| |||||||||||| | |
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| T |
39486809 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaaggcggcaaggtgtccaggtggttgtccttctctagtagtgaggttgg |
39486710 |
T |
|
| Q |
111 |
aaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggtt |
210 |
Q |
| |
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| || ||||||||||| ||||||||||||||||| |||||||| |||| | |||| ||| | ||||||||| ||||||||| |||||||||||| |
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| T |
39486709 |
atacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg---acaaaacgtggttcggtgtttgggggaagagaacattctggaaggtt |
39486613 |
T |
|
| Q |
211 |
gatg |
214 |
Q |
| |
|
|||| |
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|
| T |
39486612 |
gatg |
39486609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 39454971 - 39454783
Alignment:
| Q |
20 |
tctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggctt |
119 |
Q |
| |
|
|||||||||| ||||||||||| |||||| ||||||||||||||| | || ||||||||| || || | || |||| |||||||||| ||||||| |
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| T |
39454971 |
tctttggcaacatcaatcatggctgtgcaggacatgtcaacaacgaaagctgcgaggactccacttgcttcacc---agtaatgaggttagatacggctt |
39454875 |
T |
|
| Q |
120 |
gtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatg |
214 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||| | |||||| | || ||||||| |||||||| |||||||| |||||||||||||||| |
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| T |
39454874 |
gtttgacgtttggtttctgagcttcaaggtgagcggacatgga---ggaaactggattagtgtttgggggaagagagcattctggaaggttgatg |
39454783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 39472368 - 39472180
Alignment:
| Q |
20 |
tctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggctt |
119 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||| | | ||||||||||||||||| || || ||| |||||||||| || ||| |
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| T |
39472368 |
tctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaagcggcaaggactccatttt---ctgatctggtaatgaggttagatactactt |
39472272 |
T |
|
| Q |
120 |
gtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttctggaaggttgatg |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||| || | |||| ||| |||||||| | ||||||| |||||||||||||||| |
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| T |
39472271 |
gtttgacgtttggtttctgagcttcgaggagcgcagtcat---agagggaccttgatctgtgtttggggcaagagaacattctggaaggttgatg |
39472180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 39483592 - 39483462
Alignment:
| Q |
23 |
ttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaacggcttgtt |
122 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| || || ||| ||||| || |||| ||| |||||||||||| || || |||||| |
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| T |
39483592 |
ttggcaacatcaatcatggtggtgcagaacatgtcaacaacgaaggcggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgta |
39483493 |
T |
|
| Q |
123 |
tgacatttggtttctgagcttcgaggagagc |
153 |
Q |
| |
|
| | ||||||||||||||||| |||||||| |
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| T |
39483492 |
ttatgtttggtttctgagcttcaaggagagc |
39483462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 39458112 - 39458259
Alignment:
| Q |
1 |
gagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagta |
100 |
Q |
| |
|
|||| |||| || ||||||||||| ||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||| | || || |
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|
| T |
39458112 |
gagcgtagggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaatgaatgcagctaggactccattttctggtgct---tta |
39458208 |
T |
|
| Q |
101 |
gtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggaga |
151 |
Q |
| |
|
|||||||| || ||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
39458209 |
gtgaggttggagacggcttttttgacgtttggtttctgagctttgaggaga |
39458259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 39460599 - 39460456
Alignment:
| Q |
6 |
taggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgag |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| | || | ||| ||||| || | ||| ||||||||| |
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|
| T |
39460599 |
tagggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaaggctgtgagggttccatgtttttctctagtagtagtgag |
39460500 |
T |
|
| Q |
106 |
gttagaaacggcttgtttgacatttggtttctgagcttcgagga |
149 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||||| |
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|
| T |
39460499 |
attagatacggcttgtttgacgtttgatttctgagcttcgagga |
39460456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 153
Target Start/End: Original strand, 39470588 - 39470724
Alignment:
| Q |
14 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtggcaaggactccattttctcctcctccagtagtgaggttagaaa |
113 |
Q |
| |
|
|||||||||||||||| |||||||||| | ||||||||||||||||||| || | ||| ||| ||||| || | |||||||||||||||| || | |
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| T |
39470588 |
gaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacagcggcgaggggtccatgtt---gttctccagtagtgaggttggaga |
39470684 |
T |
|
| Q |
114 |
cggcttgtttgacatttggtttctgagcttcgaggagagc |
153 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
39470685 |
tagcttgtttgacgtttgctttatgagcttcgaggagagc |
39470724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 39464386 - 39464443
Alignment:
| Q |
14 |
gaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatggtgg |
71 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
39464386 |
gaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaacgaaggtgg |
39464443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 39464451 - 39464559
Alignment:
| Q |
103 |
gaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttggaggaagagaaacttct |
202 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| || |||||||| ||| |||| ||||||||| | | || | ||||||||||||||| |
|
|
| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcat---agcggaacctggatcagaggtttggggaagagaaacttct |
39464547 |
T |
|
| Q |
203 |
ggaaggttgatg |
214 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39464548 |
ggaaggttgatg |
39464559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 43312382 - 43312416
Alignment:
| Q |
31 |
atcaatcatggtggtgcagaacatgtcaacaacga |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43312382 |
atcaatcatggtggtgcagaacatgtcaacaacga |
43312416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 39460428 - 39460394
Alignment:
| Q |
180 |
tgtttggaggaagagaaacttctggaaggttgatg |
214 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39460428 |
tgtttgggggaagagaaacttctggaaggttgatg |
39460394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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