View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_7 (Length: 471)
Name: NF1681_high_7
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 15163760 - 15164026
Alignment:
| Q |
1 |
tgaagcagaacgttacgaataaattcttctctttaggagaaactttcaattgccaaatacaatcccaatcgacctccacattcaaatgatcaacattaat |
100 |
Q |
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| T |
15163760 |
tgaagcagaacattacgaataaattcttctctttaggagaaactttcaattgccaaatacaatcctaatcgacctccacattcaaatgatcaacattaat |
15163859 |
T |
|
| Q |
101 |
caactcattgatccacaattagtatgcactttgcacggaatactttatattatatcgaaagtactattattcaacattaaataaataatttgttgtaact |
200 |
Q |
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| T |
15163860 |
caactcattgatccacaattagtatgcactttgcacggaatactttatattatatcgaaagtactattattcaacattaaataaataatttgttgtaact |
15163959 |
T |
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| Q |
201 |
tgaaatgtttaaattattaagactatatgaaactgatattaagaatatatgtagacttttttatggt |
267 |
Q |
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| T |
15163960 |
tgaaatgtttaaattattaagactatctgaaactgatattaagaatatatgtagacttttttatggt |
15164026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 350 - 457
Target Start/End: Original strand, 15176259 - 15176366
Alignment:
| Q |
350 |
caaatcaatctcatttccatccacaactttccacgcaaaattccaaacaaaattggccacaaagtattccaagtgcaacaatgctaaaccatagccagga |
449 |
Q |
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| T |
15176259 |
caaatcaatctcatttccatccacaactttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccagga |
15176358 |
T |
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| Q |
450 |
cacattct |
457 |
Q |
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|||||||| |
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| T |
15176359 |
cacattct |
15176366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 15175952 - 15176152
Alignment:
| Q |
145 |
ttatattatatcgaaagtactattattcaacattaaa--------taaataatttgttgtaacttgaaatgtttaaattattaagactatatgaaactga |
236 |
Q |
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| T |
15175952 |
ttatattatatcgaaagtattattattcaacattaaataaataaataaataaactgttgtaactggaaaagttgaaattatcaagactgtaggaaactga |
15176051 |
T |
|
| Q |
237 |
tattaagaatatatgtagacttttttatggtnnnnnnnnncgtttgcatttcatcagggattaaaggggccatacaatctggaatacagttcaaaacatg |
336 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||| |
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| T |
15176052 |
tattaagaatatatgtagactttttaatggtaaaaaaag--gtttgcatttcatcagggatcaaaggggccatacaatctggaacacaattcgaaacatg |
15176149 |
T |
|
| Q |
337 |
aaa |
339 |
Q |
| |
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||| |
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| T |
15176150 |
aaa |
15176152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 15175102 - 15175199
Alignment:
| Q |
57 |
atacaatcccaatcgacctccacattcaaatgatcaacattaatcaactcattgatccacaattagtat-gcactttgcacggaatactttatattat |
153 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || | || || ||||| ||||||||||||||| |
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| T |
15175102 |
atacaatcccaatcgacctccacattcaagcgatcaacattaatcaactcattgatccacgatttgtttggctctgtgcacataatactttatattat |
15175199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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