View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_71 (Length: 225)
Name: NF1681_high_71
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_71 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1324636 - 1324411
Alignment:
| Q |
1 |
tatgcacgtatattatatatagctttagtacatgttgttttatagtattagcgttttctaattaagtagttagcctataatatcaataaattttgaagan |
100 |
Q |
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| T |
1324636 |
tatgcacgtatattatatatagcttcagtacgtgttgttttatagtattagcgttttctaattaagtaggtagcctataatatcaataaattttgaagaa |
1324537 |
T |
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| Q |
101 |
nnnnnnnnnnnnn--actagatcttttaaataaaacttaaaattcattaatgatcactaaatatttataaaagtgtatcatctcaatgtgagtttttcca |
198 |
Q |
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| T |
1324536 |
tttttttttttttttactagat-ttttaaataaaacttaaaattcattaatgatcactaaatatttataaaagtgtatcatctcaatgtgagtttttcca |
1324438 |
T |
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| Q |
199 |
actgcgctcaacactatcttcgctcga |
225 |
Q |
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| T |
1324437 |
actgcgctcaacactatcttcgctcga |
1324411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 24824461 - 24824510
Alignment:
| Q |
152 |
tcactaaatatttataaaagtgtatcatctcaatgtgagtttttccaact |
201 |
Q |
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| T |
24824461 |
tcactaaatatttataaaagtttatcatcccaatatgagttttttcaact |
24824510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 2354982 - 2355058
Alignment:
| Q |
122 |
ttttaaataaaacttaaaattcattaatga--tcactaaatatttataaaagtgtatcatctcaatgtgagtttttc |
196 |
Q |
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| T |
2354982 |
ttttaaacaaaacttaaaatttattagtaaaatcactaaatatttataaaagtttattatcccaataagagtttttc |
2355058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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