View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681_high_73 (Length: 213)
Name: NF1681_high_73
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 23019003 - 23018861
Alignment:
| Q |
55 |
gacacgtattatgcttccaaaatgttcctctcgtttactttccatggaaaaggacataacagcattttttattgaccacgagggaaccattggatttgta |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23019003 |
gacacgtattatgcttccaaaatgttcctctcgtttactttccatggaaaaggacataacagcattttttattgaccacgagggaaccattggatttgta |
23018904 |
T |
|
| Q |
155 |
taagtatctcagattcaactctatatttttaactatatcaata |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23018903 |
taagtatctcagattcaactctatatttttaactatatcaata |
23018861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23019057 - 23019024
Alignment:
| Q |
1 |
agtaacttcagtgtatacgttctaattaaataac |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23019057 |
agtaacttcagtgtatacgttctaattaaataac |
23019024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13753 times since January 2019
Visitors: 8302