View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_74 (Length: 213)
Name: NF1681_high_74
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 203
Target Start/End: Original strand, 39062669 - 39062847
Alignment:
| Q |
28 |
tatttcttttacattttaa--cttcatcataatgtccttttatttcatgtcatcgttttaaatattacatttgtnnnnnnnnnnng-gcaaatttacata |
124 |
Q |
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||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| | | || |||||||| |
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| T |
39062669 |
tatttcttttacattttaaaacttcatcatgatgttcttttatttcatgtcatcgttttaaatattacatttatatatataaaaaaagtaactttacata |
39062768 |
T |
|
| Q |
125 |
tttacctcaattaaaatttctctccaccccttgttgaaccaaacataatttttctataatctctcctctctcacctttg |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
39062769 |
tttacctcaattaaaatttctctccaccccttgtcgaaccaaacacaatttttcaataatctttcctctctcacctttg |
39062847 |
T |
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