View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_76 (Length: 209)
Name: NF1681_high_76
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1681_high_76 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 29690962 - 29690780
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
29690962 |
catcacaaggcataacagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc |
29690863 |
T |
|
Q |
111 |
acctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
29690862 |
acctccttacagcctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
29690780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 12606710 - 12606527
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- |
109 |
Q |
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||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||||||| |
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T |
12606710 |
catcacaaggcataacagtagatacaccaatccacctaaagatgtgattccaaacagccccaaaaacattacaatgtaataataaatgagcagatgtttc |
12606611 |
T |
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Q |
110 |
cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
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|||||||||||||||||| ||||| || || ||| |||| || |||||||||| | |||| |||||||||||||| |||||| |
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T |
12606610 |
cacctccccacaacctccaacgcataactgtgcattgatgctaatcacattacgatgataaaggttgtccttagtagacaacct |
12606527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 24905317 - 24905500
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- |
109 |
Q |
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|||||| |||||||| ||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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T |
24905317 |
catcaccaggcataacagtagaaacaccaatccacctagagatgtgattccaaacagccccgaaaacattacaatgtaataataagtgagaagatgtttc |
24905416 |
T |
|
Q |
110 |
cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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T |
24905417 |
cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacatgacgacggtaaatgttgtccttagtaggcaacct |
24905500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 14658600 - 14658698
Alignment:
Q |
12 |
atcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc |
110 |
Q |
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|
|||| ||||||||| |||||||||| | |||||| |||| ||||||||||||||| || | |||||||||||||||||||||||||||| | ||||||| |
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T |
14658600 |
atcataaggcataagagtagcaacatcaatccacgtaaaaatgtgattccaaacatccccaaaaacattacaatgtaataataagtgagcacatgtttc |
14658698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 35515909 - 35515861
Alignment:
Q |
80 |
tacaatgtaataataagtgagaagatgttt-cacctccccacaacctcc |
127 |
Q |
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|||||||||| || | |||||||||||||| |||||||||||||||||| |
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T |
35515909 |
tacaatgtaaaaaaaggtgagaagatgtttccacctccccacaacctcc |
35515861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 32246746 - 32246563
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- |
109 |
Q |
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||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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T |
32246746 |
catcagaaggcataacagtagtaaaaccaatccacctaaagatgtgattccaaacagccccgaaaacattacaatgtaataataagtgagaggatgtttc |
32246647 |
T |
|
Q |
110 |
cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
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|||||||||||||||||| |||||||| |||||||||||| ||||||| ||||| | |||| ||||||||||||||||||||| |
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T |
32246646 |
cacctccccacaacctccaacgcaaaactgatcatcaatgtcaaccacgttacggcaataaaggttgtccttagtaggcaacct |
32246563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 17686554 - 17686466
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgag |
100 |
Q |
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||||| ||||||||| | |||||||||| ||||||||||| || |||||||||||| || | |||||||||||||||||||||||||||| |
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T |
17686554 |
catcataaggcataagaatagcaacaccaatccacctaaaaatatgattccaaacatcc-caaaaacattacaatgtaataataagtgag |
17686466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 804680 - 804762
Alignment:
Q |
43 |
cacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagat-gtttcacctccccacaacc |
124 |
Q |
|
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|||||||| || |||| |||||||| | | |||| |||||||||||||||||| ||||||||| |||||||||||||||||| |
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T |
804680 |
cacctaaaaatatgatgccaaacagtcccaaaaaaattacaatgtaataataaatgagaagatattttcacctccccacaacc |
804762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 34177489 - 34177439
Alignment:
Q |
73 |
aaaacattacaatgtaataataagtgagaagatgttt-cacctccccacaa |
122 |
Q |
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|||| ||||||||| |||||||||||||||||||||| ||||||||||||| |
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T |
34177489 |
aaaaaattacaatgaaataataagtgagaagatgtttccacctccccacaa |
34177439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 42785682 - 42785499
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc |
110 |
Q |
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||||||||||||||| |||||||||| | |||||| | || || |||||||||| | |||| ||||||||| || |||||||||||||||||||| |
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T |
42785682 |
catcacaaggcataacagtagcaacatcaatccacttgtgaatatggttccaaacagatccaaaaatattacaatgaaaaaataagtgagaagatgtttc |
42785583 |
T |
|
Q |
111 |
-acctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
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||||||||||||||||| ||||| | |||||||||| |||||||||||||| || |||| ||||||||||||| ||||||| |
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|
T |
42785582 |
cacctccccacaacctccaacgcacagctgatcatcaacaccaaccacattacgtcggtaaaggttgtccttagtacgcaacct |
42785499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 2654043 - 2654090
Alignment:
Q |
81 |
acaatgtaataataagtgagaagatgttt-cacctccccacaacctcc |
127 |
Q |
|
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|||||||||||||||||| |||||||||| |||||||||||| ||||| |
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T |
2654043 |
acaatgtaataataagtgtgaagatgtttccacctccccacaccctcc |
2654090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 32807682 - 32807865
Alignment:
Q |
11 |
catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- |
109 |
Q |
|
|
||||||||||||||| ||||| |||| | |||||||| || || |||||||||| | | ||||||||||||||||| |||||||||||| |||||| |
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T |
32807682 |
catcacaaggcataacagtagaaacatcaatccacctgtgaatatggttccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttc |
32807781 |
T |
|
Q |
110 |
cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct |
193 |
Q |
|
|
||||||| || ||||||| || || || | | || || ||||||||| ||||||| |||| ||||||||| ||||||||||| |
|
|
T |
32807782 |
cacctcctcataacctccaacacagaaccggttattaacaccaaccacagtacgacggtaaaggttgtcctttgtaggcaacct |
32807865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 45637209 - 45637162
Alignment:
Q |
81 |
acaatgtaataataagtgagaagatgttt-cacctccccacaacctcc |
127 |
Q |
|
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|||||||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
T |
45637209 |
acaatgtaataataagtgtgaagatgtttccacctccccacaccctcc |
45637162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 8813818 - 8813770
Alignment:
Q |
80 |
tacaatgtaataataagtgagaagatg-tttcacctccccacaacctcc |
127 |
Q |
|
|
||||||||||||||||||| ||||||| ||| ||||||||||| ||||| |
|
|
T |
8813818 |
tacaatgtaataataagtgtgaagatgtttttacctccccacaccctcc |
8813770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 17293082 - 17293114
Alignment:
Q |
78 |
attacaatgtaataataagtgagaagatgtttc |
110 |
Q |
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||||||||||||||||||||||||||| ||||| |
|
|
T |
17293082 |
attacaatgtaataataagtgagaagaagtttc |
17293114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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