View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_high_77 (Length: 209)
Name: NF1681_high_77
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_high_77 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 275914 - 275706
Alignment:
| Q |
1 |
tcatcaaagaaaagttaatgaagatatttgttcgaagaaggagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaact |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275914 |
tcataaaagaaaagttaatgaagatatttgttcgaagaaggagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaact |
275815 |
T |
|
| Q |
101 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275814 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
275715 |
T |
|
| Q |
201 |
agagcactt |
209 |
Q |
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||||||||| |
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| T |
275714 |
agagcactt |
275706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28804 - 28596
Alignment:
| Q |
1 |
tcatcaaagaaaagttaatgaagatatttgttcgaagaaggagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaact |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28804 |
tcataaaagaaaagttaatgaagatatttgttcgaagaaggagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaacc |
28705 |
T |
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| Q |
101 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
200 |
Q |
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| T |
28704 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
28605 |
T |
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| Q |
201 |
agagcactt |
209 |
Q |
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||||||||| |
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| T |
28604 |
agagcactt |
28596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26396519 - 26396311
Alignment:
| Q |
1 |
tcatcaaagaaaagttaatgaagatatttgttcgaagaaggagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaact |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396519 |
tcataaaagaaaagttaatgaagatatttgttcgaagaaagagagatatgatcgtttgtatccaaaggcctctcaattgttggaggaaggatcattaact |
26396420 |
T |
|
| Q |
101 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396419 |
aatgagagttataactttgcatgtcatgcactggaagaggccttgaaacaatgtgcattccttaaccgatccttaaaaaatagccaagaaaatagcagga |
26396320 |
T |
|
| Q |
201 |
agagcactt |
209 |
Q |
| |
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||||||||| |
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| T |
26396319 |
agagcactt |
26396311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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