View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_10 (Length: 417)
Name: NF1681_low_10
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 11420264 - 11420654
Alignment:
| Q |
19 |
ctattagaagattgagcttggttctaactaagctataacaagaagggtattttggaaatttaatttgtacatgtttgttggcagtcttgaaagatactag |
118 |
Q |
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| T |
11420264 |
ctatttgaagattgagcttggttctaactaagctataacaagaagggtattttggaaatttaatttgtacatgtttgttggcagtgttgaaagatactag |
11420363 |
T |
|
| Q |
119 |
tagttgctatccttttgaagtagaagagtcaaagctatgaagctctttagtcttttagtattatctttatctttctttagtattactattatggggcagc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11420364 |
tagttgctatccttttgaagtagaagagtcaaagctatgaagctctttagtcttttagtgttatctttatctttctttagtattactattatggggcagc |
11420463 |
T |
|
| Q |
219 |
ttccttcacaggacattttagcattgttggaatttaagaaatgcattaagcatgaccctactggttatgttctgaattcatggaatgaggaatccattga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420464 |
ttccttcacaggacattttagcattgttggaatttaagaaatgcattaagcatgaccctactggttatgttctgaattcatggaatgaggaatccattga |
11420563 |
T |
|
| Q |
319 |
ctttgatggatgtccatcttcatggaatggtgttctttgtaatggtggtaatgttgctggtgttgtccttgataacttaggtctctctgct |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420564 |
ctttgatggatgtccatcttcatggaatggtgttctttgtaatggtggtaatgttgctggtgttgtccttgataacttaggtctctctgct |
11420654 |
T |
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