View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681_low_13 (Length: 402)
Name: NF1681_low_13
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 49686415 - 49686809
Alignment:
| Q |
1 |
cttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686415 |
cttggattggttggctacccttttaccacagttgaattcccaaactgtggtgcatt-ggcaattcaaggttgtgacgatctcaacaaaactgctacgaaa |
49686513 |
T |
|
| Q |
101 |
cacgtccagtttaccaaagga----------ttcaagttacaaacattaaaaatgagcggtccaacactatttccattgttgatctgaatttcaccaagc |
190 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686514 |
cacgtccagtttaccaaaggaggaaaacactttcaagttacaaacattaaaaatgagcggcccaacactatttccattgttgatctgaatttcaccaagc |
49686613 |
T |
|
| Q |
191 |
ttttgcagaaaaatgcttgcgaggcctttagctatgatatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagcttt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686614 |
ttttgcagaaaaatgcttgcgaggcctttagctatgatatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagcttt |
49686713 |
T |
|
| Q |
291 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686714 |
caaatgcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattc |
49686809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 49690690 - 49691078
Alignment:
| Q |
16 |
tacccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttacc |
115 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| ||| | |||||||| ||| |
|
|
| T |
49690690 |
tacccttttacaacagttgaattcccaagctgtggtgcatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagtatgtccagttaacc |
49690788 |
T |
|
| Q |
116 |
aaagga----------ttcaagttacaaacattaaaaatgagcggtcca------acactatttccattgttgatctgaatttcaccaagcttttgcaga |
199 |
Q |
| |
|
||| || | ||||||| ||| ||| | ||| | |||||| |||||||||||||| |||| | ||| |||||||||||||| ||| |
|
|
| T |
49690789 |
aaaagaggaaaactcttccaagttaaaaagattgataatcactggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggaga |
49690888 |
T |
|
| Q |
200 |
aaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaactttttatatgaaagacaacataacagctttcaaatg |
296 |
Q |
| |
|
|||||||||| ||||| || ||||||| |||| || |||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
49690889 |
aaaatgcttgtgaggcattcagctatgttaatattaccctccctcctcccactccttttggaactttttttatgaaaaactacataacagctttcaaatg |
49690988 |
T |
|
| Q |
297 |
cagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattc |
386 |
Q |
| |
|
|| |||||||| |||||||| || |||| |||| ||||||||||| ||||||| | |||| || ||||||||||||||| || ||||| |
|
|
| T |
49690989 |
caaccatacccgaaaattaggcattcaccctccaagtaatttcttcataaatagttcttgtcatccctatgatttttactttggcgattc |
49691078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 49679055 - 49679444
Alignment:
| Q |
16 |
tacccttttaccacagttgaattcccaaactgtggtgcatttggcaattcaaggttgtgacgatctcaacaaaactgctacgaaacacgtccagtttacc |
115 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||| |
|
|
| T |
49679055 |
tacccttttacaacagttgaattcccaagctgtggtacatt-ggcaattcaaggttgtgataatctcaacaaaactgctatgaagcacgtccagttaacc |
49679153 |
T |
|
| Q |
116 |
aaagga----------ttcaagttacaaacattaaaaatgagcggtcca------acactatttccattgttgatctgaatttcaccaagcttttgcaga |
199 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||||| |||||||||||||| |||| | ||| |||||||||||||| ||| |
|
|
| T |
49679154 |
aaaggaggaaaactctttcaagttacaaacattgataatcgcgggtccattggcaacactatttccattattgaccccaatatcaccaagcttttggaga |
49679253 |
T |
|
| Q |
200 |
aaaatgcttgcgaggcctttagctatg---atatcactctccctcctccctctccttttggaactttttat-atgaaagacaacataacagctttcaaat |
295 |
Q |
| |
|
| |||||||| ||||| || ||| ||| |||| || |||| |||| ||||||||||||||||||||| | |||||| || |||||||||||||||||| |
|
|
| T |
49679254 |
agaatgcttgtgaggcattcagccatgttaatattacactccttccttcctctccttttggaacttttttttatgaaaaactacataacagctttcaaat |
49679353 |
T |
|
| Q |
296 |
gcagccatacccaaaaattagccagcaacccaccaaataatttcttcaaaaatagtacatgtcctcgctatgatttttacttcggtgattc |
386 |
Q |
| |
|
||| || ||||| |||||||| || | | || |||| ||||||||||| ||||||| | |||| || ||||||||||||||| || ||||| |
|
|
| T |
49679354 |
gcaaccgtacccgaaaattaggcatccaacctccaagtaatttcttcagaaatagttcttgtcatccctatgatttttactttggcgattc |
49679444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13011 times since January 2019
Visitors: 8270