View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_15 (Length: 389)

Name: NF1681_low_15
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_15
NF1681_low_15
[»] chr8 (16 HSPs)
chr8 (17-70)||(32105288-32105341)
chr8 (73-118)||(21514961-21515006)
chr8 (180-236)||(40649573-40649629)
chr8 (75-117)||(23754732-23754774)
chr8 (75-113)||(31266263-31266301)
chr8 (75-117)||(40649454-40649496)
chr8 (190-233)||(44952746-44952789)
chr8 (75-117)||(31596952-31596994)
chr8 (75-117)||(44061721-44061763)
chr8 (75-117)||(45405535-45405577)
chr8 (75-113)||(45406013-45406051)
chr8 (75-116)||(41659376-41659417)
chr8 (75-116)||(42733591-42733632)
chr8 (75-116)||(43397560-43397601)
chr8 (73-117)||(3206353-3206397)
chr8 (61-117)||(33100494-33100550)
[»] chr6 (12 HSPs)
chr6 (180-233)||(2204312-2204365)
chr6 (180-236)||(10729680-10729736)
chr6 (180-236)||(28982547-28982603)
chr6 (180-234)||(34383766-34383820)
chr6 (71-117)||(28982664-28982710)
chr6 (180-236)||(5456756-5456812)
chr6 (75-118)||(34383882-34383925)
chr6 (75-117)||(33651024-33651066)
chr6 (68-117)||(354273-354322)
chr6 (180-236)||(354381-354436)
chr6 (74-117)||(5456875-5456918)
chr6 (75-117)||(5522663-5522705)
[»] chr1 (12 HSPs)
chr1 (180-236)||(46859539-46859595)
chr1 (66-118)||(18982514-18982566)
chr1 (272-357)||(42331613-42331694)
chr1 (180-236)||(36775214-36775270)
chr1 (75-116)||(33125349-33125390)
chr1 (77-118)||(36775112-36775153)
chr1 (73-113)||(36775074-36775114)
chr1 (73-117)||(46859420-46859464)
chr1 (75-117)||(4213076-4213118)
chr1 (75-117)||(47642632-47642674)
chr1 (75-116)||(52714927-52714968)
chr1 (180-236)||(5466241-5466297)
[»] chr4 (16 HSPs)
chr4 (270-385)||(41805809-41805920)
chr4 (180-237)||(3698422-3698479)
chr4 (302-385)||(39599339-39599417)
chr4 (75-117)||(52379060-52379102)
chr4 (75-111)||(12595662-12595698)
chr4 (78-117)||(10780107-10780146)
chr4 (78-117)||(10973716-10973755)
chr4 (75-117)||(2999116-2999158)
chr4 (75-117)||(13139152-13139194)
chr4 (75-113)||(32130265-32130303)
chr4 (75-117)||(38519797-38519839)
chr4 (75-117)||(39158109-39158151)
chr4 (75-117)||(53654775-53654817)
chr4 (75-117)||(56271364-56271406)
chr4 (208-236)||(4272474-4272502)
chr4 (75-115)||(21392574-21392614)
[»] chr7 (9 HSPs)
chr7 (180-236)||(2819362-2819418)
chr7 (180-236)||(12651228-12651284)
chr7 (75-117)||(43159600-43159642)
chr7 (180-233)||(19223555-19223608)
chr7 (73-118)||(48814832-48814877)
chr7 (74-118)||(2819256-2819300)
chr7 (75-117)||(19223443-19223485)
chr7 (75-117)||(35586798-35586840)
chr7 (75-117)||(37899238-37899280)
[»] chr3 (31 HSPs)
chr3 (180-236)||(31350512-31350568)
chr3 (180-236)||(49875903-49875958)
chr3 (184-236)||(31664720-31664772)
chr3 (75-117)||(27168707-27168749)
chr3 (73-118)||(37143123-37143168)
chr3 (180-232)||(37143212-37143262)
chr3 (180-233)||(46114270-46114323)
chr3 (184-236)||(31930941-31930993)
chr3 (73-116)||(31425536-31425579)
chr3 (73-116)||(31931045-31931088)
chr3 (75-117)||(24095431-24095473)
chr3 (75-117)||(26550241-26550283)
chr3 (75-117)||(31350631-31350673)
chr3 (75-117)||(49021715-49021757)
chr3 (180-236)||(15927501-15927557)
chr3 (180-232)||(31425639-31425691)
chr3 (69-116)||(18741115-18741162)
chr3 (75-117)||(3953500-3953542)
chr3 (79-117)||(26772376-26772414)
chr3 (75-117)||(30863101-30863143)
chr3 (75-117)||(33939240-33939281)
chr3 (75-117)||(34057978-34058020)
chr3 (75-117)||(39697247-39697289)
chr3 (75-117)||(48353000-48353042)
chr3 (75-117)||(49875800-49875842)
chr3 (75-113)||(53681115-53681153)
chr3 (75-116)||(38671622-38671662)
chr3 (73-117)||(15927620-15927664)
chr3 (73-101)||(31664626-31664654)
chr3 (184-232)||(33976304-33976352)
chr3 (75-111)||(52100265-52100301)
[»] chr5 (16 HSPs)
chr5 (302-387)||(745810-745892)
chr5 (75-117)||(16594401-16594443)
chr5 (75-117)||(30004813-30004855)
chr5 (75-116)||(40829418-40829459)
chr5 (341-389)||(3262402-3262450)
chr5 (77-116)||(34379459-34379498)
chr5 (75-117)||(189728-189770)
chr5 (75-117)||(6940175-6940217)
chr5 (75-117)||(10659098-10659140)
chr5 (75-117)||(19481207-19481249)
chr5 (75-113)||(34124625-34124663)
chr5 (75-116)||(17097828-17097869)
chr5 (75-116)||(32912042-32912083)
chr5 (75-116)||(40039294-40039335)
chr5 (65-117)||(19840011-19840063)
chr5 (69-117)||(39195715-39195763)
[»] scaffold1956 (1 HSPs)
scaffold1956 (75-117)||(775-817)
[»] chr2 (18 HSPs)
chr2 (75-117)||(9634461-9634503)
chr2 (75-117)||(19916659-19916701)
chr2 (75-117)||(22526019-22526061)
chr2 (75-117)||(37105645-37105687)
chr2 (61-117)||(24766142-24766198)
chr2 (74-117)||(38911955-38911998)
chr2 (75-117)||(8427556-8427598)
chr2 (75-117)||(12498661-12498703)
chr2 (75-117)||(12784424-12784466)
chr2 (75-117)||(15269865-15269907)
chr2 (75-117)||(18876947-18876989)
chr2 (75-117)||(32869830-32869872)
chr2 (75-117)||(36517200-36517242)
chr2 (75-117)||(40210093-40210135)
chr2 (75-117)||(43487383-43487424)
chr2 (75-117)||(45259310-45259352)
chr2 (61-117)||(4061984-4062040)
chr2 (65-117)||(18737899-18737951)
[»] scaffold0178 (1 HSPs)
scaffold0178 (75-117)||(9780-9822)
[»] scaffold0481 (1 HSPs)
scaffold0481 (180-236)||(1107-1163)


Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 32105341 - 32105288
Alignment:
Q  17 ataagcaaccaaaaattttcatgacaatcttacataaccccaccataaaaataa 70  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32105341 ataagcaaccaaaatttttcatgacaatcttacataaccccaccataaaaataa 32105288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 21515006 - 21514961
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  21515006 gtaatgatatttgaacatccattttttaacaatttttgtgacaacc 21514961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 40649573 - 40649629
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||    
T  40649573 attgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 40649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 23754774 - 23754732
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| |||||||||||||| ||||||||||||    
T  23754774 aatgatatttgaacaaccattttttaataacttttgtgacaac 23754732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 31266301 - 31266263
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  31266301 aatgatatttgaacatccattttttaacaatttttgtga 31266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 40649454 - 40649496
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  40649454 aatgatatttgaacattcattttttaacaatttttgtgacaac 40649496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 44952746 - 44952789
Alignment:
Q  190 aaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 233  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||    
T  44952746 aaaaagagagaaaaaagattgtcactaaaaattgttagaaattg 44952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 31596952 - 31596994
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  31596952 aatgatatttgaacatccattttatgacaatttttgtgacaac 31596994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 44061721 - 44061763
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  44061721 aatgatatttgaacaaccattttttgataacttttgtgacaac 44061763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 45405535 - 45405577
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||| || ||| |||||||||||||||||||||||||||    
T  45405535 aatgatatatgtacaaccattttttaataatttttgtgacaac 45405577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 45406051 - 45406013
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  45406051 aatgatatttgaacaactattttttaataatttttgtga 45406013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 41659417 - 41659376
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||||||  | ||||||||||||||||    
T  41659417 aatgatatttgaacatccatttaatgataatttttgtgacaa 41659376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 42733632 - 42733591
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||| |||||||| || ||||||||||||||    
T  42733632 aatgatatttgaacaaccatttttaaacaatttttgtgacaa 42733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 43397560 - 43397601
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||| ||| | ||||||||||||||||    
T  43397560 aatgatatttgaacatccactttgttataatttttgtgacaa 43397601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 3206353 - 3206397
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||    
T  3206353 gtaatgatatttgaacaaccatttgatgataatttttgtgacaac 3206397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 33100550 - 33100494
Alignment:
Q  61 ataaaaataagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||| |||||| | ||||||||||||||| ||||||| ||| || ||||||||||||    
T  33100550 ataacaataagagaaatgatatttgaacaaccattttataacaacttttgtgacaac 33100494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 2204365 - 2204312
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2204365 attgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattg 2204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 10729680 - 10729736
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10729680 attgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggtt 10729736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 28982603 - 28982547
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  28982603 attgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggtt 28982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 34383820 - 34383766
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattgg 234  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  34383820 attgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattgg 34383766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 28982710 - 28982664
Alignment:
Q  71 gtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||    
T  28982710 gtgtaatgatatttgaacatccattttttaacaacttttgtgacaac 28982664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 5456812 - 5456756
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||||||||| | |||||  || ||||||||||||||||||||||||||    
T  5456812 attgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggtt 5456756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 34383925 - 34383882
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    |||||||||||||||| |||||||||| ||||||||||||||||    
T  34383925 aatgatatttgaacattcattttttaacaatttttgtgacaacc 34383882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 33651024 - 33651066
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  33651024 aatgatatttgaacatctattttgtaataatttttgtgacaac 33651066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 354273 - 354322
Alignment:
Q  68 taagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||| |||||||| |||||||||||||||||||| || ||||||||||||    
T  354273 taagagtaatgatgtttgaacatccattttttaacaacttttgtgacaac 354322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 354381 - 354436
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||||| ||||||||||| ||| ||  ||||||||||||||||||||||    
T  354381 attgtccaataaaa-gagaggaaaaaaattatccttaaaagttgttggaaattggtt 354436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 5456918 - 5456875
Alignment:
Q  74 taatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| |||||||||| || ||||||||||||    
T  5456918 taatgatatttgaacattcattttttaacaacttttgtgacaac 5456875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 5522705 - 5522663
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||| ||| |||| |||||||||||||||||    
T  5522705 aatgatatttgaacattcatcttttgataatttttgtgacaac 5522663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 46859539 - 46859595
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46859539 attgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggtt 46859595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 18982514 - 18982566
Alignment:
Q  66 aataagtgtaatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||||||    
T  18982514 aataagagtaatgatatttgaacatccattttttaacaacttttgtgacaacc 18982566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 42331613 - 42331694
Alignment:
Q  272 aataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaa 357  Q
    ||||||| ||||||||||||| ||  ||||| |||||||| |||||||||||||||||| ||||   |||||||||||||||||||    
T  42331613 aataacgccagtttaacactgttacattaaa-gggaggttagtgttatttgtgaaaatagaggg---ggtgtaagtgacatattaa 42331694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 36775214 - 36775270
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    ||||||||||||||| |||| |||||| |||||||  ||||||||||||||||||||    
T  36775214 attgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggtt 36775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 33125390 - 33125349
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  33125390 aatgatatttgaacatccattttatgataatttttgtgacaa 33125349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 36775112 - 36775153
Alignment:
Q  77 tgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaacc 36775153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 36775074 - 36775114
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  36775074 gtaatgatatttgaacatccattttttaacaacttttgtga 36775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 46859420 - 46859464
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||| |||||||||||||| || ||||||||||||    
T  46859420 gtaatgatatttgagcatccattttttaacaacttttgtgacaac 46859464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 4213076 - 4213118
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  4213076 aatgatatttgaacaaccattttttgataacttttgtgacaac 4213118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 47642674 - 47642632
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||    
T  47642674 aatgatatttgaacaaccattttttgataacttttgtgacaac 47642632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 52714968 - 52714927
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||||||| ||| || |||||||||||    
T  52714968 aatgatatttgaacatccattttataacaacttttgtgacaa 52714927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 5466297 - 5466241
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  5466297 attgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 5466241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 385
Target Start/End: Original strand, 41805809 - 41805920
Alignment:
Q  270 ctaataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagg 369  Q
    ||||||||| ||| ||||||||| ||  ||||| |||||||| |||||||| ||||||| | ||||||   ||||||||||||| ||||||| |||||||    
T  41805809 ctaataacgccagcttaacactgttacattaaa-gggaggttagtgttattggtgaaaacagaggggg---tgtaagtgacataataacatatttcaagg 41805904  T
Q  370 gaggtgagtataattt 385  Q
    ||||||||| ||||||    
T  41805905 gaggtgagtgtaattt 41805920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 3698422 - 3698479
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtta 237  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  3698422 attgtccaataaaaagagaggaaaaaagttgtcactaaaaattgttggaaattagtta 3698479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 385
Target Start/End: Complemental strand, 39599417 - 39599339
Alignment:
Q  302 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagtataattt 385  Q
    |||||||||| | |||||||||||||||| ||||||   || |||||||||  |||||||| ||||||||||||||| ||||||    
T  39599417 aagggaggttagcgttatttgtgaaaataaaggggg---tgcaagtgacat--taacatacctcaagggaggtgagtgtaattt 39599339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 52379102 - 52379060
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||||||| |||||||||||||||||||||||    
T  52379102 aatgatatttgtacatccactttttaataatttttgtgacaac 52379060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 12595698 - 12595662
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgt 111  Q
    ||||||||||||||||||||||||| |||||||||||    
T  12595698 aatgatatttgaacatccattttttgataatttttgt 12595662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 10780146 - 10780107
Alignment:
Q  78 gatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  10780146 gatatttgaacatccattttttaataaattttatgacaac 10780107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 10973755 - 10973716
Alignment:
Q  78 gatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  10973755 gatatttgaacatccattttttaataaattttatgacaac 10973716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 2999116 - 2999158
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  2999116 aatgatatttgaacatccattttatgacaatttttgtgacaac 2999158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 13139152 - 13139194
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | ||||||||| |||||||    
T  13139152 aatgatatttgaacatccattttatgataatttttatgacaac 13139194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 32130303 - 32130265
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  32130303 aatgatatttgaacaaccattttttgataatttttgtga 32130265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 38519797 - 38519839
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| | |||||||||||||||    
T  38519797 aatgatatttgaacaaccattttttgacaatttttgtgacaac 38519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 39158109 - 39158151
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||  |||||||| |||||||||||||||||    
T  39158109 aatgatatttgaacaatcattttttgataatttttgtgacaac 39158151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 53654817 - 53654775
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||| | |||||||||||||||||    
T  53654817 aatgatatttgaacatctattttatgataatttttgtgacaac 53654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 56271364 - 56271406
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  56271364 aatgatatttgaacatccattttatgataacttttgtgacaac 56271406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 4272502 - 4272474
Alignment:
Q  208 ttgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||||||||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggtt 4272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 21392574 - 21392614
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgaca 115  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  21392574 aatgatatttgaacaatcattttgtaataatttttgtgaca 21392614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 2819362 - 2819418
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  2819362 attgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 2819418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 12651284 - 12651228
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    ||||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||    
T  12651284 attgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggtt 12651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 43159642 - 43159600
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43159642 aatgatatttgaacaaccattttttaacaatttttgtgacaac 43159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 19223555 - 19223608
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 233  Q
    |||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||    
T  19223555 attgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattg 19223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 48814877 - 48814832
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  48814877 gtaatgatatttgaacattcattttttaacaacttttgtgacaacc 48814832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 2819256 - 2819300
Alignment:
Q  74 taatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    |||||||||||||||||||||||||||| || |||| ||||||||    
T  2819256 taatgatatttgaacatccattttttaacaacttttatgacaacc 2819300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 19223443 - 19223485
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| | ||||||| |||||||||||||||    
T  19223443 aatgatatttgaacatctactttttaacaatttttgtgacaac 19223485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 35586840 - 35586798
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  35586840 aatgatatttgaacatccattttatgataacttttgtgacaac 35586798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 37899280 - 37899238
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  37899280 aatgatatttgaacatccattttgtgacaatttttgtgacaac 37899238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 31350568 - 31350512
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  31350568 attgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggtt 31350512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 49875903 - 49875958
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  49875903 attgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggtt 49875958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 31664720 - 31664772
Alignment:
Q  184 tccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  31664720 tccaatgaaaagagaggaaaaaggttatcactaaaagttgttggaaattggtt 31664772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 27168749 - 27168707
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  27168749 aatgatatttgaacaaccattttttaataatttttgtgacaac 27168707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 37143123 - 37143168
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaacc 118  Q
    ||||||||||||||||||||||||||||| || |||||||||||||    
T  37143123 gtaatgatatttgaacatccattttttaacaacttttgtgacaacc 37143168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 37143212 - 37143262
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 232  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  37143212 attgtccaataaaaagag--gaaaaaggttgtcactaaaagttgttggaaatt 37143262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 46114323 - 46114270
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 233  Q
    ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  46114323 attgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgttggaaattg 46114270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 31930993 - 31930941
Alignment:
Q  184 tccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||| |||||||||||||||| || ||||||||| ||||||||||||||||    
T  31930993 tccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggtt 31930941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 31425536 - 31425579
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  31425536 gtaatgatatttgaacatccattttttaacaacttttgtgacaa 31425579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 31931088 - 31931045
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||||||||||||||||| || |||||||||||    
T  31931088 gtaatgatatttgaacatccattttttaacaacttttgtgacaa 31931045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 24095473 - 24095431
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  24095473 aatgatatttgaacatccattttatgataatttttgtgacaac 24095431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 26550241 - 26550283
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  26550241 aatgatatttgcacaaccattttttaataatttttgtgacaac 26550283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 31350673 - 31350631
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  31350673 aatgatattttaacatccattttttaacaatttttgtgacaac 31350631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 49021715 - 49021757
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  49021715 aatgatatttgtacatccattttttaataacttttgtgacaac 49021757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 15927557 - 15927501
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||||||||| | |||||  |||||||||||| || |||||||||||||    
T  15927557 attgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattggaaattggtt 15927501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 31425639 - 31425691
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 232  Q
    ||||||||||||||||||||||||||| |||||| ||||| || ||| |||||    
T  31425639 attgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaatt 31425691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 18741115 - 18741162
Alignment:
Q  69 aagtgtaatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||| ||||||||||||||||| ||||||| ||||||||||| ||||    
T  18741115 aagtgaaatgatatttgaacatcaattttttgataatttttgtaacaa 18741162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 3953542 - 3953500
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||||| |||| | |||||||||||||||||    
T  3953542 aatgatatttgaacatcccttttatgataatttttgtgacaac 3953500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 26772376 - 26772414
Alignment:
Q  79 atatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  26772376 atatttgaacaaccattttataataatttttgtgacaac 26772414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 30863143 - 30863101
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  30863143 aatgatatttgaacatccatttgatgataatttttgtgacaac 30863101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 33939240 - 33939281
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  33939240 aatgatatttgaacaaccatttttt-ataatttttgtgacaac 33939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 34058020 - 34057978
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  34058020 aatgatatttgaacatccattttatgataacttttgtgacaac 34057978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 39697289 - 39697247
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | ||||||||||| |||||    
T  39697289 aatgatatttgaacatccattttgtgataatttttgtaacaac 39697247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 48353000 - 48353042
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||||||||||||||| || ||||||||||||    
T  48353000 aatgatatttgtacatccattttttaacaacttttgtgacaac 48353042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 49875800 - 49875842
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||| |||||||||||||||| || ||||||||||||    
T  49875800 aatgatattttaacatccattttttaacaacttttgtgacaac 49875842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 53681115 - 53681153
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  53681115 aatgatatttgaacaaccactttttaataatttttgtga 53681153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 38671622 - 38671662
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  38671622 aatgatatttgaacaaccatttttt-ataatttttgtgacaa 38671662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 15927664 - 15927620
Alignment:
Q  73 gtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||| ||||||||||||||||||||||| || |||||| |||||    
T  15927664 gtaataatatttgaacatccattttttaacaacttttgtaacaac 15927620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 31664626 - 31664654
Alignment:
Q  73 gtaatgatatttgaacatccattttttaa 101  Q
    |||||||||||||||||||||||||||||    
T  31664626 gtaatgatatttgaacatccattttttaa 31664654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 33976352 - 33976304
Alignment:
Q  184 tccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 232  Q
    |||||||||||||||||||||   |||||||||||| |||||| |||||    
T  33976352 tccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaatt 33976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 52100265 - 52100301
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgt 111  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  52100265 aatgatatttgtacaaccattttttaataatttttgt 52100301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 745892 - 745810
Alignment:
Q  302 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagtataatttac 387  Q
    |||||||||| ||||||||||| |||||  ||||||   ||||||||| ||||||||||||||  |||||||||||| ||||||||    
T  745892 aagggaggttagtgttatttgttaaaatcgaggggg---tgtaagtgatatattaacatactttgagggaggtgagtgtaatttac 745810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 16594443 - 16594401
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaac 16594401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 30004855 - 30004813
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||| ||||||||||||||||||||||||| |||||||    
T  30004855 aatgatattagaacatccattttttaataatttttttgacaac 30004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 40829418 - 40829459
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  40829418 aatgatatttgtacaaccattttttaataatttttgtgacaa 40829459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 3262402 - 3262450
Alignment:
Q  341 tgtaagtgacatattaacatacttcaagggaggtgagtataatttaccc 389  Q
    ||||||||| | |||||||||| ||||||||||||||| ||||||||||    
T  3262402 tgtaagtgataaattaacatacctcaagggaggtgagtgtaatttaccc 3262450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 34379459 - 34379498
Alignment:
Q  77 tgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  34379459 tgatatttgaacaaccatttttaaataatttttgtgacaa 34379498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 189770 - 189728
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  189770 aatgatatttgaacatccattttatgataacttttgtgacaac 189728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 6940217 - 6940175
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||    
T  6940217 aatgatatttgtacaaccattttataataatttttgtgacaac 6940175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 10659140 - 10659098
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||  |||||||||||| ||||||||||||    
T  10659140 aatgatatttgaacattaattttttaataacttttgtgacaac 10659098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 19481249 - 19481207
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  19481249 aatgatatttgaacatccattttatgataacttttgtgacaac 19481207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 34124625 - 34124663
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtga 113  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  34124625 aatgatatttgaacatccattttatgataatttttgtga 34124663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 17097869 - 17097828
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||| ||||||||| |||| |||||||||||    
T  17097869 aatgatatttgaacaaccattttttgataacttttgtgacaa 17097828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 32912042 - 32912083
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    |||||||||||||||| |||||| | ||||||||||||||||    
T  32912042 aatgatatttgaacattcattttatgataatttttgtgacaa 32912083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 40039294 - 40039335
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaa 116  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  40039294 aatgatatttgaacaactattttttgataatttttgtgacaa 40039335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 19840063 - 19840011
Alignment:
Q  65 aaataagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||| | |||||||||||||||| |||||| | | |||||||||||||||    
T  19840063 aaataagagaaatgatatttgaacattcattttatgacaatttttgtgacaac 19840011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 39195715 - 39195763
Alignment:
Q  69 aagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||| |||||||||||||||  || ||||| |||||||||||||||||    
T  39195715 aagtgaaatgatatttgaacaatcactttttgataatttttgtgacaac 39195763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 775 - 817
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  775 aatgatatttgaacatccattttttgataatttttgtgacaac 817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 9634503 - 9634461
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  9634503 aatgatatttgaacatccattttatgataatttttgtgacaac 9634461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 19916659 - 19916701
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||| |||||||||||||||||||||||    
T  19916659 aatgatatttgaacaaccactttttaataatttttgtgacaac 19916701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 22526061 - 22526019
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  22526061 aatgatatttgaacatccattttttgacaatttttgtgacaac 22526019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 37105645 - 37105687
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  37105645 aatgatatttgaacatccattttatgataatttttgtgacaac 37105687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 24766142 - 24766198
Alignment:
Q  61 ataaaaataagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||| ||| | ||||||||||| ||| |||||||||||||| ||||||||||||    
T  24766142 ataaaaacaagagaaatgatatttgtacaaccattttttaataacttttgtgacaac 24766198  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 38911998 - 38911955
Alignment:
Q  74 taatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||    
T  38911998 taatgatatttgaacaaccattttttgatattttttgtgacaac 38911955  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 8427556 - 8427598
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||||| | |||||||||||||||    
T  8427556 aatgatatttgaacatctattttttgacaatttttgtgacaac 8427598  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 12498703 - 12498661
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||  ||| |||||||||||||||    
T  12498703 aatgatatttgaacatccatttggtaacaatttttgtgacaac 12498661  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 12784466 - 12784424
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||    
T  12784466 aatgatatttgtacaaccattttataataatttttgtgacaac 12784424  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 15269865 - 15269907
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  15269865 aatgatatttgaacatccattttatgacaatttttgtgacaac 15269907  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 18876989 - 18876947
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  18876989 aatgatatttgaacatctatttggtaataatttttgtgacaac 18876947  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 32869830 - 32869872
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    |||||||||||||||| |||||| | |||||||||||||||||    
T  32869830 aatgatatttgaacattcattttatgataatttttgtgacaac 32869872  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 36517200 - 36517242
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||||| ||||| | |||||||||||||||||    
T  36517200 aatgatatttgaacatctattttatgataatttttgtgacaac 36517242  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 40210135 - 40210093
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| | |||||| ||||||||||||||||||    
T  40210135 aatgatatttgaacaactatttttaaataatttttgtgacaac 40210093  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 43487383 - 43487424
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  43487383 aatgatatttgaacaaccatttttt-ataatttttgtgacaac 43487424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Complemental strand, 45259352 - 45259310
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||    
T  45259352 aatgatatttgtacatccattttctaacaatttttgtgacaac 45259310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 4062040 - 4061984
Alignment:
Q  61 ataaaaataagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||| ||| | ||||||||||||||||||||||  | | |||||||||||||||    
T  4062040 ataaaaagaagagaaatgatatttgaacatccatttaatgacaatttttgtgacaac 4061984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 18737951 - 18737899
Alignment:
Q  65 aaataagtgtaatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||| | ||||||||||| | ||||||||||||| || ||||||||||||    
T  18737951 aaataagagaaatgatatttgtatatccattttttaacaacttttgtgacaac 18737899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 9780 - 9822
Alignment:
Q  75 aatgatatttgaacatccattttttaataatttttgtgacaac 117  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||    
T  9780 aatgatatttgtacaaccatttttttataatttttgtgacaac 9822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 1163 - 1107
Alignment:
Q  180 attgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 236  Q
    |||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  1163 attgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 1107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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