View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_17 (Length: 382)
Name: NF1681_low_17
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1681_low_17 |
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[»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 354
Target Start/End: Complemental strand, 107416 - 107065
Alignment:
Q |
3 |
atctacaaatatcttgcttgtttcagaaatgtgatttttgagagtgattgcgagagtttgattatgcagattcgtaatgacattgaggaacctagaacct |
102 |
Q |
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T |
107416 |
atctacaaatatcttgcttgtttcagaaatgtgatttttgagagggattgcgagagtttgattatgcagattcgtagtgacattgaggaacctagaacct |
107317 |
T |
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Q |
103 |
atgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattaga |
202 |
Q |
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T |
107316 |
atgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagttattaga |
107217 |
T |
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Q |
203 |
ttaggtaaggaacatattcttattatacactctcatcactagannnnnnnggcactatcatctatcatcatctctccttcataccaatccacccaccacc |
302 |
Q |
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T |
107216 |
ttaagtaaggaacatattcttattatacactctcatcactaggtttttttggtactatcatctatcatcatgtctccttcataccaacccacccacctcc |
107117 |
T |
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Q |
303 |
agcatcaaaaccatcctcacatatgtaatctttcttctttctaagcaaaccc |
354 |
Q |
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T |
107116 |
ggcatcaaaaccatcatcacatctgtaatttttcttctttctaagcaaaccc |
107065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 11029884 - 11029787
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctca |
237 |
Q |
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T |
11029884 |
ggggtttagcatgaaaaatgagagttgtttttcatcacaggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactctca |
11029787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17512251 - 17512186
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta |
205 |
Q |
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T |
17512251 |
ggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagatta |
17512186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 33370920 - 33370857
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat |
203 |
Q |
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T |
33370920 |
ggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat |
33370857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 30781027 - 30780977
Alignment:
Q |
142 |
ggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgtt |
192 |
Q |
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T |
30781027 |
ggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtt |
30780977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 34716427 - 34716464
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcat |
177 |
Q |
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T |
34716427 |
ggggtttagcatgggaatggagagttgtttcccatcat |
34716464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 37562298 - 37562361
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat |
203 |
Q |
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T |
37562298 |
ggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat |
37562361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 37563073 - 37563032
Alignment:
Q |
144 |
tttagcatgggaaagcagagttgtttcccatcatacgaaagt |
185 |
Q |
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T |
37563073 |
tttagcatgggaaagaagagttgtttctcatcataggaaagt |
37563032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 42346150 - 42346113
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcat |
177 |
Q |
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T |
42346150 |
ggggtttagcatgggaatggagagttgtttcccatcat |
42346113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 26711571 - 26711625
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag |
194 |
Q |
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T |
26711571 |
ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag |
26711625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 26981308 - 26981362
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag |
194 |
Q |
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||||||||| ||||||||| | |||||||||||| |||| |||||||||| |||| |
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T |
26981308 |
ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag |
26981362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 4555505 - 4555440
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta |
205 |
Q |
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|||||||||||||||||| |||| ||||||||||| |||||| |||||||| |||||||||| |
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T |
4555505 |
ggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagatta |
4555440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 32943524 - 32943589
Alignment:
Q |
144 |
tttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggta |
209 |
Q |
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T |
32943524 |
tttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggta |
32943589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 40320455 - 40320422
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttccca |
173 |
Q |
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||||||||||||||||||| |||||||||||||| |
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T |
40320455 |
ggggtttagcatgggaaaggagagttgtttccca |
40320422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 28975343 - 28975380
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcat |
177 |
Q |
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T |
28975343 |
ggggtttagcatgggaaaggagagttgtttcctatcat |
28975380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 45297552 - 45297589
Alignment:
Q |
140 |
ggggtttagcatgggaaagcagagttgtttcccatcat |
177 |
Q |
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||||||||| ||||||||| |||||||||||||||||| |
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T |
45297552 |
ggggtttagtatgggaaaggagagttgtttcccatcat |
45297589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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