View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_2 (Length: 610)

Name: NF1681_low_2
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_2
NF1681_low_2
[»] chr7 (8 HSPs)
chr7 (8-594)||(6346380-6346967)
chr7 (13-176)||(6219562-6219725)
chr7 (57-314)||(6242588-6242845)
chr7 (14-179)||(6333269-6333434)
chr7 (220-314)||(6326013-6326107)
chr7 (220-330)||(6333490-6333599)
chr7 (14-179)||(6325792-6325957)
chr7 (275-337)||(6219395-6219457)
[»] scaffold2079 (2 HSPs)
scaffold2079 (219-305)||(823-909)
scaffold2079 (14-118)||(992-1096)
[»] chr8 (1 HSPs)
chr8 (527-560)||(5690866-5690899)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Original strand, 6346380 - 6346967
Alignment:
Q  8 ccaagaaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagct 107  Q
    |||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6346380 ccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagtt 6346479  T
Q  108 cttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatactt 207  Q
    ||||||||||| ||| | | |||| | |||||||||||||| | || ||||||||||||||||||| ||||| | ||||||||||||||| || ||||||    
T  6346480 cttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaaccatgaaaaccaaagccatcagaagtggtgatttttcgatactt 6346579  T
Q  208 gcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattc 307  Q
    | ||| |||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  6346580 gtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatagttttccaacttcattcaagctagaaagggttgaataaattc 6346679  T
Q  308 aagaaaagaaaatgttagcaatagtatatttaataacttcaaagtagaagagttacc-aataaaaaggagaaacatagcaagttaatgttttagtagtga 406  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  6346680 aagaaaataaaatgttagcaatagtatatttaataacttgaatgtagaagagttaccaaataaaaaagagaaacatagcaagttaatgttttagtagtga 6346779  T
Q  407 attatgagctgagaattgaacttattaaccttgttgaagttgaattgaacacggtcgcatttactgctgtagttccttgtgccattgttcctcttactgt 506  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| |  || ||| |||||||||||||||||||||||||||||    
T  6346780 attatgagctgagaattgaactaatttaccttgttgaagttgaattgaacacggttgcatatgatgttgtggttccttgtgccattgttcctcttactgt 6346879  T
Q  507 gagctcaacactaacttcagtattgttatgaagcatggcatccatggaaggaatagagaaaagcttgtattgatagtaatgagaaagt 594  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6346880 gagctcaacacaaatttcagtattgttatgaagcatggcatccatggaaggaaaagagaaaagcttgtattgatagtaatgagaaagt 6346967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 6219725 - 6219562
Alignment:
Q  13 aaaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga 112  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6219725 aaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttga 6219626  T
Q  113 tgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa 176  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6219625 tgtgaatctgtaacattgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaa 6219562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 314
Target Start/End: Complemental strand, 6242845 - 6242588
Alignment:
Q  57 tgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaatctggaacgttgtaataagcaccaaaaccatgaagaaa 156  Q
    ||||| ||||||||||||||||| ||| ||||||||| |||||||||| || |||||||||| ||| ||| |||| | |||||||||| | | | || ||    
T  6242845 tgaaataacacttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaa 6242746  T
Q  157 agagcaaccatgaaaactaaagcaaacagaagtggtgatttctccatacttgcatttgttgttgcaaacccgattattgcaaacaatagctcaaaaaatt 256  Q
    |||  ||    |||||| ||||| | ||  ||| | |||||  |  | |||| |||  ||| |||||||||||  ||||||||||||||||  |||||||    
T  6242745 agaaaaatagcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaatt 6242646  T
Q  257 ggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa 314  Q
    ||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||    
T  6242645 ggccaaataattctccaacttcattcaatctagaaagggttgaatgaattcaagaaaa 6242588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6333269 - 6333434
Alignment:
Q  14 aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat 113  Q
    ||||||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||| ||| | |||| || | |||| ||| ||||||||    
T  6333269 aaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacacttccaagtaaaagaatgatcatcttggaaggaaagaaactcttgat 6333368  T
Q  114 gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc 179  Q
    |||||  || |||  ||| | |||||||||| ||| | || |||||| ||||||||||||||||||    
T  6333369 gtgaaaatgcaacaatgtcacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc 6333434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 6326013 - 6326107
Alignment:
Q  220 gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaa 314  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| ||||||||||||    
T  6326013 gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaagaaaa 6326107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 6333490 - 6333599
Alignment:
Q  220 gcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaattcaagaaaagaaaa 319  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| ||||||| |||||||| |||||||| |||| |||    
T  6333490 gcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctagaaatggttgaatgaattcaag-aaagtaaa 6333588  T
Q  320 tgttagcaata 330  Q
    |||||| ||||    
T  6333589 tgttaggaata 6333599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6325792 - 6325957
Alignment:
Q  14 aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat 113  Q
    ||||||| ||||||||  | ||||| | ||| ||||| | || ||||||||||||||||||||||| ||| | |||| || | |||| ||| ||||||||    
T  6325792 aaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacacttccaagtaaaagaatgatcatcttggaaggaatgaatctcttgat 6325891  T
Q  114 gtgaatctggaacgttgtaataagcaccaaaaccatgaagaaaagagcaaccatgaaaactaaagc 179  Q
    |||||| || | | |||| | |||||||||| ||| | || |||||| ||||||||||||||||||    
T  6325892 gtgaatatgtatcattgttacaagcaccaaagccaggtagtaaagagaaaccatgaaaactaaagc 6325957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 6219457 - 6219395
Alignment:
Q  275 cttcattcaagctagaaagggttgaataaattcaagaaaagaaaatgttagcaatagtatatt 337  Q
    ||||| ||||||||||||| ||||||| ||||||| || |  ||||||||| |||||||||||    
T  6219457 cttcagtcaagctagaaagagttgaatcaattcaaaaatatcaaatgttaggaatagtatatt 6219395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2079 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 909 - 823
Alignment:
Q  219 tgcaaacccgattattgcaaacaatagctcaaaaaattggccaaatagttttccaacttcattcaagctagaaagggttgaataaat 305  Q
    |||||||||||  |||||||||||| |||  |||||||||||||||| || ||||||||||||||| ||||||||||||||||||||    
T  909 tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaat 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2079; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 1096 - 992
Alignment:
Q  14 aaatccaagcaattgtatgagaaatcatcatcaaagcaagaactgaaacaacacttccaagtaaaacaataaccatcatgaatggaaggaagctcttgat 113  Q
    ||||||||||||||||  | ||||| | |||||| || | || ||||||||||||||||||||||| ||| |||||||||||||| ||||| || |||||    
T  1096 aaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggaggaaactattgat 997  T
Q  114 gtgaa 118  Q
    |||||    
T  996 gtgaa 992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 560
Target Start/End: Complemental strand, 5690899 - 5690866
Alignment:
Q  527 tattgttatgaagcatggcatccatggaaggaat 560  Q
    |||||||||||| |||||||||||||||||||||    
T  5690899 tattgttatgaaacatggcatccatggaaggaat 5690866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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