View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_21 (Length: 359)

Name: NF1681_low_21
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_21
NF1681_low_21
[»] chr6 (4 HSPs)
chr6 (117-204)||(35043112-35043199)
chr6 (206-272)||(35043225-35043291)
chr6 (18-68)||(35043055-35043105)
chr6 (206-241)||(35042800-35042835)
[»] chr4 (3 HSPs)
chr4 (268-308)||(29101906-29101946)
chr4 (210-266)||(50847309-50847365)
chr4 (268-308)||(52413657-52413697)
[»] chr2 (2 HSPs)
chr2 (270-308)||(36237617-36237655)
chr2 (272-308)||(8541737-8541773)
[»] chr5 (2 HSPs)
chr5 (271-308)||(23995293-23995330)
chr5 (270-310)||(234684-234724)
[»] scaffold1862 (1 HSPs)
scaffold1862 (268-308)||(67-107)
[»] chr1 (2 HSPs)
chr1 (268-308)||(23621648-23621688)
chr1 (268-308)||(23738401-23738441)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 35043112 - 35043199
Alignment:
Q  117 ttataagcattatgaatgcataagttacacctaataatgtttctaaagaatcaaaattaaaggatagcaagaaacgataaatgatttt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  35043112 ttataagcattatgaatgcataagttacacctaataatgtttctaaataatgaaaattaaaggatagcaagaaacgataaatgatttt 35043199  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 35043225 - 35043291
Alignment:
Q  206 tcaggtgtgatcctttaataattttattttgttgggataataggagccattggatcaaagaattaca 272  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35043225 tcaggtgtgatccttcaataattttattttgttgggataataggagtaattggatcaaagaattaca 35043291  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 35043055 - 35043105
Alignment:
Q  18 taaataatcccaattgtgtatagggatcttgatttcaactcattgcacata 68  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  35043055 taaataatcccaattgtatatagggatcttgatttcaactcattgaacata 35043105  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 35042835 - 35042800
Alignment:
Q  206 tcaggtgtgatcctttaataattttattttgttggg 241  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35042835 tcaggtgtgatccttcaataattttattttgttggg 35042800  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 29101906 - 29101946
Alignment:
Q  268 ttacacctgatgtcaacggatcctgcctctctatatatata 308  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  29101906 ttacacctgatgtcaacggatcctgcctatatatatatata 29101946  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 50847365 - 50847309
Alignment:
Q  210 gtgtgatcctttaataattttattttgttgggataataggagccattggatcaaaga 266  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||| |||||| |||||    
T  50847365 gtgtgatccttcaatattttcattttgttgggataatacgagcctttggattaaaga 50847309  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 52413657 - 52413697
Alignment:
Q  268 ttacacctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  52413657 ttacacctggtgtcaacggatcctgtctctatatatatata 52413697  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 36237655 - 36237617
Alignment:
Q  270 acacctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  36237655 acacctggtgtcaacggatcctgactctctatatatata 36237617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 8541773 - 8541737
Alignment:
Q  272 acctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  8541773 acctgatgtcaacggatcctgactctatatatatata 8541737  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 23995330 - 23995293
Alignment:
Q  271 cacctgatgtcaacggatcctgcctctctatatatata 308  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  23995330 cacctgatgtcaacggatcctgactctatatatatata 23995293  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 234724 - 234684
Alignment:
Q  270 acacctgatgtcaacggatcctgcctctctatatatataaa 310  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  234724 acacctggtgtcaacggatcctgactctatatatatataaa 234684  T

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Target: scaffold1862 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 67 - 107
Alignment:
Q  268 ttacacctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  67 ttacacctggtgtcaacggatcctgtctctatatatatata 107  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23621688 - 23621648
Alignment:
Q  268 ttacacctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  23621688 ttacacctggtgtcaacggatcctacctctatatatatata 23621648  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 23738441 - 23738401
Alignment:
Q  268 ttacacctgatgtcaacggatcctgcctctctatatatata 308  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  23738441 ttacacctggtgtcaacagatcctacctctctatatatata 23738401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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