View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_23 (Length: 355)
Name: NF1681_low_23
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 34136197 - 34136522
Alignment:
| Q |
22 |
tagcaagtttgactgtagccagttgctcatttcagaaacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctc |
121 |
Q |
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| T |
34136197 |
tagcaaatttgattgcagccactcactcatttcagaaacactgatcaatctttggttgtgtaaatgagctaagtgatacatttattaaactatctttctc |
34136296 |
T |
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| Q |
122 |
taaggtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgtgtaatctgtggacaaaaaacttaccccatttatatggct |
221 |
Q |
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| T |
34136297 |
tactgtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgtgtaatctgtggacaaaaaacttaccccatttatatggct |
34136396 |
T |
|
| Q |
222 |
tatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctcttt |
321 |
Q |
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| T |
34136397 |
tatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctcttt |
34136496 |
T |
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| Q |
322 |
ctccttgttcaccattactctgtgct |
347 |
Q |
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| T |
34136497 |
ctccttgttcaccattactctatgct |
34136522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 34139154 - 34139474
Alignment:
| Q |
29 |
tttgactgtagccagttgctcatttcagaaacaccgatcaatctttggttgtttacatgagctaagtaatacatttattaaaatatctttctctaaggta |
128 |
Q |
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| T |
34139154 |
tttgattgtagccagttgctcattttagaaacaccgatcaatctttggttgtttacatgagctaagtcatacatttattaaaatatctttctctaaggta |
34139253 |
T |
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| Q |
129 |
gcttata--atgataaatttgaagattctcctcatcttgtttcttgaaattactgtgtaatctgtggacaaaaaacttaccccatttatatggcttatat |
226 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| | ||| |||||| |||| |||||||||||||| ||||||||| |
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| T |
34139254 |
gcttatataatgataaatttgaagattctcctcttcttgtttcttgaagttactgtttgttctatggacataaaatttaccccatttataaggcttatat |
34139353 |
T |
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| Q |
227 |
tttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctctttctcct |
326 |
Q |
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|||| || |||||||| || |||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||||||| || |||||||||| |
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| T |
34139354 |
tttgaagggttttgctcgttaataagctcctccaaaggcttgatttcaatatcatatcctgggttgaaaaagaatggaatagaaaatctttctttctcct |
34139453 |
T |
|
| Q |
327 |
tgttcaccattactctgtgct |
347 |
Q |
| |
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||||||||| | ||||||||| |
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| T |
34139454 |
tgttcaccaatgctctgtgct |
34139474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 34141926 - 34142131
Alignment:
| Q |
119 |
ctctaaggtagcttataatgataaatttgaagattctcctcatcttgtttcttgaaattactgtgtaatctgtggacaaaaaacttaccccatttatatg |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| | |||||| |||| |||||| ||||||||||||| |
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| T |
34141926 |
ctctagggtagcttataatgataaatttgaagattctccacatcttgtttcttgatattgctgtcttttctgtgaacaagaaactttccccatttatatg |
34142025 |
T |
|
| Q |
219 |
gcttatattttggagagttttgcttatttgtaagctcctccaaaggcttgatttcagcatcatgtcctggattgaagaagaatggaatagaaaacctctc |
318 |
Q |
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|| ||||||||| || |||||||| |||| ||||||| || ||||| |||| |||||| |||| |||||| || ||||| |||||||||||||| || |
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| T |
34142026 |
gcctatattttgaagggttttgctcatttataagctcttcaaaaggtttgacttcagcgtcatatcctgggaataaaaagaagggaatagaaaacctttc |
34142125 |
T |
|
| Q |
319 |
tttctc |
324 |
Q |
| |
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||||| |
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| T |
34142126 |
cttctc |
34142131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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