View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_25 (Length: 350)

Name: NF1681_low_25
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_25
NF1681_low_25
[»] chr8 (13 HSPs)
chr8 (18-333)||(37681898-37682213)
chr8 (86-277)||(37679666-37679855)
chr8 (177-276)||(41841160-41841259)
chr8 (177-276)||(40054312-40054411)
chr8 (177-276)||(10944407-10944506)
chr8 (177-276)||(44878983-44879082)
chr8 (177-276)||(44880839-44880938)
chr8 (194-248)||(44582870-44582924)
chr8 (177-250)||(42220880-42220952)
chr8 (193-276)||(42555091-42555174)
chr8 (177-250)||(42092021-42092093)
chr8 (177-220)||(42872514-42872557)
chr8 (89-133)||(37677755-37677799)
[»] chr1 (21 HSPs)
chr1 (174-276)||(14652522-14652624)
chr1 (174-276)||(14662313-14662415)
chr1 (177-276)||(14654348-14654447)
chr1 (177-276)||(14664139-14664238)
chr1 (177-276)||(14669717-14669816)
chr1 (177-276)||(14683750-14683849)
chr1 (177-276)||(14706088-14706187)
chr1 (177-276)||(14708578-14708677)
chr1 (179-276)||(14681601-14681698)
chr1 (177-276)||(14674481-14674580)
chr1 (177-272)||(14676632-14676727)
chr1 (177-276)||(14679859-14679958)
chr1 (177-276)||(14716291-14716390)
chr1 (177-276)||(38175538-38175637)
chr1 (177-276)||(14667119-14667218)
chr1 (177-276)||(33988070-33988169)
chr1 (177-276)||(28366206-28366306)
chr1 (184-276)||(11872489-11872581)
chr1 (184-255)||(37422176-37422247)
chr1 (177-249)||(28698553-28698625)
chr1 (230-276)||(14703133-14703179)
[»] chr2 (23 HSPs)
chr2 (177-276)||(32918080-32918179)
chr2 (177-276)||(30732008-30732107)
chr2 (179-276)||(30733990-30734087)
chr2 (177-276)||(2841025-2841124)
chr2 (177-275)||(43850049-43850147)
chr2 (177-258)||(9020847-9020928)
chr2 (177-258)||(9008021-9008102)
chr2 (177-258)||(9026786-9026867)
chr2 (177-250)||(9032053-9032126)
chr2 (184-276)||(10763886-10763978)
chr2 (177-258)||(8973312-8973393)
chr2 (177-258)||(9023447-9023528)
chr2 (177-244)||(8979322-8979389)
chr2 (179-276)||(19232408-19232504)
chr2 (177-244)||(8984693-8984760)
chr2 (184-276)||(9030405-9030497)
chr2 (185-244)||(8988463-8988522)
chr2 (184-258)||(8992155-8992229)
chr2 (194-255)||(35701906-35701967)
chr2 (179-246)||(6471747-6471813)
chr2 (192-258)||(9016508-9016577)
chr2 (205-276)||(17225671-17225743)
chr2 (208-276)||(17275862-17275930)
[»] chr4 (12 HSPs)
chr4 (178-276)||(26984675-26984773)
chr4 (178-276)||(26998748-26998846)
chr4 (177-276)||(11652400-11652499)
chr4 (177-276)||(49106537-49106636)
chr4 (177-276)||(50077207-50077306)
chr4 (177-276)||(3461150-3461249)
chr4 (177-276)||(49108641-49108740)
chr4 (178-276)||(48205832-48205930)
chr4 (205-276)||(21503706-21503777)
chr4 (179-276)||(41013554-41013651)
chr4 (184-237)||(6431957-6432010)
chr4 (184-275)||(26982549-26982637)
[»] chr6 (7 HSPs)
chr6 (172-343)||(30521237-30521408)
chr6 (177-276)||(10795898-10795997)
chr6 (177-276)||(10791660-10791759)
chr6 (179-276)||(8875691-8875788)
chr6 (230-276)||(13136607-13136653)
chr6 (220-276)||(11333273-11333329)
chr6 (183-250)||(21216031-21216098)
[»] chr5 (8 HSPs)
chr5 (177-276)||(3643640-3643739)
chr5 (177-276)||(7524968-7525067)
chr5 (177-276)||(1716459-1716559)
chr5 (184-276)||(4103252-4103344)
chr5 (210-326)||(5350672-5350788)
chr5 (183-248)||(19261152-19261217)
chr5 (230-276)||(13636365-13636411)
chr5 (179-276)||(16037861-16037956)
[»] scaffold0549 (1 HSPs)
scaffold0549 (228-341)||(5447-5560)
[»] chr7 (2 HSPs)
chr7 (184-277)||(8128150-8128242)
chr7 (171-276)||(27134505-27134610)
[»] chr3 (1 HSPs)
chr3 (179-225)||(15758562-15758608)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 37681898 - 37682213
Alignment:
Q  18 taaatctagtgcggctgagggatctattggtagctgcattggactttagaaagnnnnnnntagcatagtactcatgagttctatgtgccacattgcttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  37681898 taaatctagtgcggctgagggatctattggtagctgcattggactttagaaagaaaaaaatagcatagtactcatgagttctatgtgccacattgcttag 37681997  T
Q  118 ttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatttctcggccttttggctaagatcaagtgtagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37681998 ttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatttctcggccttttggctaagatcaagtgtagta 37682097  T
Q  218 tctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgnnnnnnnagggtgagagtccaccaaaatagcttgctatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||    
T  37682098 tctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgtttttttaggatgagagtccaccaaaatagcttgctatt 37682197  T
Q  318 aggtctctcaagtgtc 333  Q
    ||||||||||||||||    
T  37682198 aggtctctcaagtgtc 37682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 277
Target Start/End: Original strand, 37679666 - 37679855
Alignment:
Q  86 tactcatgagttctatgtgccacattgcttagttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatt 185  Q
    |||||||||||| ||||| |||||||| ||||  |||| ||||||||| || ||||||   ||||||| ||||||| | |  | | |||| | |||| ||    
T  37679666 tactcatgagttttatgtcccacattggttagaagaaataacaagtactgaagctttgc--tataaaataagagttcaattacataacaatttatacctt 37679763  T
Q  186 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaattt 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  37679764 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattt 37679855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 41841259 - 41841160
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  41841259 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaatt 41841160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 40054312 - 40054411
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 10944506 - 10944407
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||    
T  10944506 tcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaatt 10944407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 44878983 - 44879082
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||||||    
T  44878983 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44879082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 44880938 - 44880839
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  |||| |||||||||||    
T  44880938 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44880839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 44582870 - 44582924
Alignment:
Q  194 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 44582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 42220952 - 42220880
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 250  Q
    |||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  42220952 tcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 42555174 - 42555091
Alignment:
Q  193 cttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||  |||||   ||||||||||||||||    
T  42555174 cttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatt 42555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 42092021 - 42092093
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 250  Q
    |||||| |||||  |||||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||||    
T  42092021 tcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 42872557 - 42872514
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatct 220  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  42872557 tcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 37677755 - 37677799
Alignment:
Q  89 tcatgagttctatgtgccacattgcttagttgaaacaacaagtac 133  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  37677755 tcatgagttctatgtcccacattggttggatgaaacaacaagtac 37677799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 14652522 - 14652624
Alignment:
Q  174 aaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 273  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14652522 aaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 14652621  T
Q  274 att 276  Q
    |||    
T  14652622 att 14652624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 14662313 - 14662415
Alignment:
Q  174 aaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 273  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14662313 aaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 14662412  T
Q  274 att 276  Q
    |||    
T  14662413 att 14662415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 14654447 - 14654348
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14654447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14654348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 14664238 - 14664139
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14664238 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14664139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 14669816 - 14669717
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14669816 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14669717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14683750 - 14683849
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14683750 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14683849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14706088 - 14706187
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14706088 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14706187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14708578 - 14708677
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14708578 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 14681601 - 14681698
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14681601 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14681698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14674481 - 14674580
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  14674481 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatt 14674580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 14676632 - 14676727
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatatta 272  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  14676632 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14679859 - 14679958
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  14679859 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatt 14679958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 14716291 - 14716390
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  14716291 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 14716390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 38175637 - 38175538
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  38175637 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaatt 38175538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 14667218 - 14667119
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||| |||||||||||    
T  14667218 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaatt 14667119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 33988070 - 33988169
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   ||||||||||||||||    
T  33988070 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaatt 33988169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 28366306 - 28366206
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg-ggccaatggtccacacgatattaaat 275  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||  |||||||||||||||    
T  28366306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaat 28366207  T
Q  276 t 276  Q
    |    
T  28366206 t 28366206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 11872581 - 11872489
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||  ||||||||||||||||    
T  11872581 tttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaatt 11872489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 37422176 - 37422247
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaa 255  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  37422176 tttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 28698553 - 28698625
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 249  Q
    ||||||||||||||| ||||||||||||||||| |||||||| | || |||||| |||||||| |||||||||    
T  28698553 tcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 14703133 - 14703179
Alignment:
Q  230 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  14703133 agtttaatatttgatatgtggaccaatagtccacacgatattaaatt 14703179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 32918080 - 32918179
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32918080 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 32918179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 30732008 - 30732107
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  30732008 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 30732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 30733990 - 30734087
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||    
T  30733990 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatt 30734087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 2841124 - 2841025
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||    
T  2841124 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaatt 2841025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 275
Target Start/End: Original strand, 43850049 - 43850147
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaat 275  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||| ||||||||||    
T  43850049 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaat 43850147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9020847 - 9020928
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgg 9020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9008021 - 9008102
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9008021 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgg 9008102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9026786 - 9026867
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9026786 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgg 9026867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 9032053 - 9032126
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 250  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032053 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 10763978 - 10763886
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||| || ||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaatt 10763886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 8973312 - 8973393
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  8973312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 8973393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9023447 - 9023528
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  9023447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 8979322 - 8979389
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 244  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8979322 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 19232504 - 19232408
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||| |||  ||||| ||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaatt 19232408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 8984693 - 8984760
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 244  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  8984693 tcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 9030405 - 9030497
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||  ||||||  |||||  |||||||||    
T  9030405 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaatt 9030497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 8988463 - 8988522
Alignment:
Q  185 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 244  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  8988463 ttcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 8992155 - 8992229
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 258  Q
    |||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||||||  |||| |||||||    
T  8992155 tttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgg 8992229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 35701906 - 35701967
Alignment:
Q  194 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaa 255  Q
    |||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||||    
T  35701906 ttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaa 35701967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 6471813 - 6471747
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatat 246  Q
    |||| ||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatat 6471747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 9016508 - 9016577
Alignment:
Q  192 ccttttggctaagatcaagtgtagtatctgttcttatc---agtttaatatctgatatgtgggccaatgg 258  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||||||  |||| |||||||    
T  9016508 ccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgg 9016577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 17225743 - 17225671
Alignment:
Q  205 atcaagtgtagtatctgttctt-atcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||||||||||||| || ||| |||||||| ||||||| ||| ||||||   || |||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaatt 17225671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 17275862 - 17275930
Alignment:
Q  208 aagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||||||||  ||||||||||||| ||| | | |||||||| |||||||  ||||||||||| ||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaatt 17275930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 26984773 - 26984675
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 26984675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 26998846 - 26998748
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 26998748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 11652499 - 11652400
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  11652499 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaatt 11652400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 49106636 - 49106537
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  49106636 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 49106537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 50077306 - 50077207
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| |||||||||||    
T  50077306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaatt 50077207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 3461249 - 3461150
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  ||||||||||||||||    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 3461150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 49108740 - 49108641
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  ||||||||||||||||    
T  49108740 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 49108641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 276
Target Start/End: Original strand, 48205832 - 48205930
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||| ||| ||||  ||| |||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatt 48205930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21503706 - 21503777
Alignment:
Q  205 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaatt 21503777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 41013651 - 41013554
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| |||||||||||||||||||| |||| ||| |||| | |||||||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaatt 41013554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 237  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 26982549 - 26982637
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaat 275  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| |||||| ||||| ||||||||  ||||| |  ||| ||||||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaat 26982637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 343
Target Start/End: Original strand, 30521237 - 30521408
Alignment:
Q  172 acaaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatatt 271  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |   |||||||||||    
T  30521237 acaaatcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatatt 30521336  T
Q  272 aaatttgnnnnnnnagggtgagagtccaccaaaatagcttgctattaggtctctcaagtgtcgcctttgctt 343  Q
     |||||        |||| |||||||||| |  ||||||||||||| |||||||||||||||| ||||||||    
T  30521337 caatttattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctt 30521408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 10795997 - 10795898
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  10795997 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaatt 10795898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 10791759 - 10791660
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||| |||||||||||    
T  10791759 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaatt 10791660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 8875691 - 8875788
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |   |||||||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatt 8875788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 13136607 - 13136653
Alignment:
Q  230 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaatt 13136653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 11333273 - 11333329
Alignment:
Q  220 tgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaatt 11333329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 21216031 - 21216098
Alignment:
Q  183 atttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 250  Q
    |||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||||| ||||||||    
T  21216031 atttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtgg 21216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 3643640 - 3643739
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 7524968 - 7525067
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatt 7525067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 1716559 - 1716459
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggcc-aatggtccacacgatattaaat 275  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  |||||||||||||||    
T  1716559 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaat 1716460  T
Q  276 t 276  Q
    |    
T  1716459 t 1716459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 4103252 - 4103344
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4103252 tttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaatt 4103344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 5350672 - 5350788
Alignment:
Q  210 gtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgnnnnnnnagggtgagagtccaccaaaatagc 309  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||  ||||||||||||| ||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  310 ttgctattaggtctctc 326  Q
    |||||||| | ||||||    
T  5350772 ttgctattggatctctc 5350788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 19261217 - 19261152
Alignment:
Q  183 atttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 248  Q
    ||||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261217 atttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 13636365 - 13636411
Alignment:
Q  230 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||||||||||||||||||||  ||| |||||||||| |||||||||    
T  13636365 agtttaatatctgatatgtggatcaacggtccacacggtattaaatt 13636411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 16037861 - 16037956
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 276  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | |||||  || |||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaatt 16037956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 5447 - 5560
Alignment:
Q  228 tcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgnnnnnnnagggtgagagtccaccaaaatagcttgctattaggtctctca 327  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||        |||  |||||||||||| |||||||||||||| |||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctca 5546  T
Q  328 agtgtcgcctttgc 341  Q
    ||||||||||||||    
T  5547 agtgtcgcctttgc 5560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 8128150 - 8128242
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaattt 277  Q
    |||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  8128150 tttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatggt-cacacaatattaaattt 8128242  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 27134505 - 27134610
Alignment:
Q  171 cacaaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatat 270  Q
    |||| ||||||| ||| ||||||||||  |||||||||| | ||||||||||||||||  |||||||||||||||||||| | ||||   || |||||||    
T  27134505 cacacatcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatat 27134604  T
Q  271 taaatt 276  Q
    ||||||    
T  27134605 taaatt 27134610  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttct 225  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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