View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_28 (Length: 343)
Name: NF1681_low_28
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 6629700 - 6630014
Alignment:
| Q |
20 |
agtactaaacccacgaaaaattagcaccaagaaaacctaaccaaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagatga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6629700 |
agtactaaacccacgaaaaattagcaccaagaaaacctaaccaaagggaagtaggaaagtcacaaaaccgctagacaacctaaaagaccacaaaagatga |
6629799 |
T |
|
| Q |
120 |
catggnnnnnnnntaccattcctaaaggaatccctaaaacctcgaactaacgaacaaatcactcgtgataaaggcataacctcaacccaaacccacctca |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629800 |
catggaaaaaa--taccattcctaaaggaatccctaaaacctcgaactaacgaacaaaccactcgtgataaaggcataacctcaacccaaacccacctca |
6629897 |
T |
|
| Q |
220 |
cacacacctatccaacgaaaaactacgtattgagaccccaaaaccccaagccaagcaagtgtatacaatcaacaaccacctcatccattcccaaaacaca |
319 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6629898 |
cacacacctatccaacg-aaaactacgcattgagaccccaaaaccccaagccaagcaagtgtatacaatcaacaaccacctcatccattcccacaacaca |
6629996 |
T |
|
| Q |
320 |
catttttcactaaatcac |
337 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
6629997 |
catttttcactaaatcac |
6630014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 337
Target Start/End: Original strand, 6803253 - 6803574
Alignment:
| Q |
20 |
agtactaaacccacgaaaaattagcaccaagaaaacctaaccaaa--gggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6803253 |
agtactaaacccacgaaaaattagcaccaagaaaacctaaccaaaaagggaagtaggaaagtcaaaaaaccgctagacaacctaaaagaccacaaaagat |
6803352 |
T |
|
| Q |
118 |
gacatggnnnnnnnntaccattcctaaaggaatccctaaaacctcgaactaacgaacaaatcactcgtgataaaggcataacctcaacccaaacccacct |
217 |
Q |
| |
|
||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
6803353 |
gacatggaaaaaaaataccattcctaaaagaatcgctaaaacctcgaactaacgaacaaatcactcgtgataaagccataacctcaacccaaacccacct |
6803452 |
T |
|
| Q |
218 |
cacacacacctatccaacgaaaaactacgtattgagaccccaaa---accccaagccaagcaagtgtatacaatcaacaaccacctcatccattcccaaa |
314 |
Q |
| |
|
||||||| ||||||| || ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
6803453 |
cacacactcctatcc-actgaaaactacgcattgagaccccaaaagtaccccaagccaagcaagtgtatacaatcaacaaccacctcatccatttcgaca |
6803551 |
T |
|
| Q |
315 |
acacacatttttcactaaatcac |
337 |
Q |
| |
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|| |||||||||||||||||||| |
|
|
| T |
6803552 |
acgcacatttttcactaaatcac |
6803574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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