View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_39 (Length: 261)

Name: NF1681_low_39
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_39
NF1681_low_39
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-249)||(107170-107416)
[»] chr4 (3 HSPs)
chr4 (140-249)||(11029775-11029884)
chr4 (140-205)||(17512186-17512251)
chr4 (140-203)||(33370857-33370920)
[»] chr1 (2 HSPs)
chr1 (142-192)||(30780977-30781027)
chr1 (140-177)||(34716427-34716464)
[»] chr8 (3 HSPs)
chr8 (140-203)||(37562298-37562361)
chr8 (144-185)||(37563032-37563073)
chr8 (140-177)||(42346113-42346150)
[»] chr5 (4 HSPs)
chr5 (140-194)||(26711571-26711625)
chr5 (140-194)||(26981308-26981362)
chr5 (140-205)||(4555440-4555505)
chr5 (144-209)||(32943524-32943589)
[»] chr7 (1 HSPs)
chr7 (140-173)||(40320422-40320455)
[»] chr6 (1 HSPs)
chr6 (140-177)||(28975343-28975380)
[»] chr3 (1 HSPs)
chr3 (140-177)||(45297552-45297589)


Alignment Details
Target: scaffold0003 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 107416 - 107170
Alignment:
Q  3 atctacaaatatcttgcttgtttcagaaatgtgatttttgagagtgattgcgagagtttgattatgcagattcgtaatgacattgaggaacctagaacct 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  107416 atctacaaatatcttgcttgtttcagaaatgtgatttttgagagggattgcgagagtttgattatgcagattcgtagtgacattgaggaacctagaacct 107317  T
Q  103 atgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattaga 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  107316 atgttgggaatatagtgaaagggataagatatcagtgggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagttattaga 107217  T
Q  203 ttaggtaaggaacatattcttattatacactctcatcactagatttt 249  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  107216 ttaagtaaggaacatattcttattatacactctcatcactaggtttt 107170  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 11029884 - 11029775
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggtaaggaacatattcttattatacactctcatc 239  Q
    |||||||||||||  |||  ||||||||||  ||||| | |||||||||| |||| |||||||| | |||| ||||| | |||||||||||||||||| |    
T  11029884 ggggtttagcatgaaaaatgagagttgtttttcatcacaggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactctcaac 11029785  T
Q  240 actagatttt 249  Q
    || |||||||    
T  11029784 acgagatttt 11029775  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17512251 - 17512186
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 205  Q
    ||||||||||||| ||| | | ||||||||||||||||  |||||||||| |||||||||||||||    
T  17512251 ggggtttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagatta 17512186  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 33370920 - 33370857
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 203  Q
    ||||||||||||||||||| | | |||||||||| |||  |||||| |||||||| ||||||||    
T  33370920 ggggtttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagat 33370857  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 30781027 - 30780977
Alignment:
Q  142 ggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgtt 192  Q
    |||||| |||||||||| ||||||||||||||||||  |||||||||||||    
T  30781027 ggtttaacatgggaaaggagagttgtttcccatcatgggaaagtaaatgtt 30780977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 34716427 - 34716464
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcat 177  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  34716427 ggggtttagcatgggaatggagagttgtttcccatcat 34716464  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 37562298 - 37562361
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagat 203  Q
    ||||||||||||||||||| ||| |||||||||| |||| |||||| ||| |||  ||||||||    
T  37562298 ggggtttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat 37562361  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 37563073 - 37563032
Alignment:
Q  144 tttagcatgggaaagcagagttgtttcccatcatacgaaagt 185  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  37563073 tttagcatgggaaagaagagttgtttctcatcataggaaagt 37563032  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 42346150 - 42346113
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcat 177  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  42346150 ggggtttagcatgggaatggagagttgtttcccatcat 42346113  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 26711571 - 26711625
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 194  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26711571 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26711625  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 26981308 - 26981362
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttag 194  Q
    ||||||||| ||||||||| | |||||||||||| |||| |||||||||| ||||    
T  26981308 ggggtttagtatgggaaaggaaagttgtttcccaacataggaaagtaaattttag 26981362  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 4555505 - 4555440
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagatta 205  Q
    ||||||||||||||||||    |||| |||||||||||  |||||| |||||||| ||||||||||    
T  4555505 ggggtttagcatgggaaatggaagttctttcccatcatgtgaaagttaatgttagccattagatta 4555440  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 32943524 - 32943589
Alignment:
Q  144 tttagcatgggaaagcagagttgtttcccatcatacgaaagtaaatgttagtcattagattaggta 209  Q
    ||||||||||||||| | | |||||||||| |||  |||||| |||||||| |||||||| |||||    
T  32943524 tttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatcaggta 32943589  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 40320455 - 40320422
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttccca 173  Q
    ||||||||||||||||||| ||||||||||||||    
T  40320455 ggggtttagcatgggaaaggagagttgtttccca 40320422  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 28975343 - 28975380
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcat 177  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  28975343 ggggtttagcatgggaaaggagagttgtttcctatcat 28975380  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 45297552 - 45297589
Alignment:
Q  140 ggggtttagcatgggaaagcagagttgtttcccatcat 177  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  45297552 ggggtttagtatgggaaaggagagttgtttcccatcat 45297589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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