View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_41 (Length: 254)

Name: NF1681_low_41
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_41
NF1681_low_41
[»] chr2 (7 HSPs)
chr2 (1-184)||(30731493-30731676)
chr2 (187-254)||(30731961-30732028)
chr2 (202-254)||(8973280-8973332)
chr2 (202-254)||(9023415-9023467)
chr2 (223-254)||(8979311-8979342)
chr2 (223-254)||(9026775-9026806)
chr2 (223-254)||(9032042-9032073)
[»] chr1 (18 HSPs)
chr1 (2-184)||(14670148-14670330)
chr1 (63-184)||(14676148-14676263)
chr1 (63-184)||(14683266-14683381)
chr1 (187-254)||(14669796-14669863)
chr1 (187-254)||(14706041-14706108)
chr1 (187-254)||(14716244-14716311)
chr1 (187-254)||(14654427-14654494)
chr1 (187-254)||(14664218-14664285)
chr1 (195-254)||(14674442-14674501)
chr1 (195-254)||(14679820-14679879)
chr1 (195-254)||(14681560-14681619)
chr1 (188-254)||(14708532-14708598)
chr1 (187-254)||(14676585-14676652)
chr1 (187-254)||(14683703-14683770)
chr1 (202-254)||(28366286-28366338)
chr1 (202-254)||(33988038-33988090)
chr1 (66-133)||(14653974-14654040)
chr1 (66-133)||(14663765-14663831)
[»] chr8 (3 HSPs)
chr8 (201-254)||(41841239-41841292)
chr8 (201-254)||(44878950-44879003)
chr8 (201-254)||(44880918-44880971)
[»] chr6 (2 HSPs)
chr6 (200-254)||(10795977-10796031)
chr6 (200-254)||(10791739-10791793)
[»] chr4 (4 HSPs)
chr4 (200-254)||(50077286-50077340)
chr4 (200-254)||(49106616-49106670)
chr4 (200-254)||(49108720-49108774)
chr4 (221-254)||(11652479-11652512)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 30731493 - 30731676
Alignment:
Q  1 acctaaggaccgactaatccgatggagcgatcctttgtctattgttcaggagttgaagaggatgtttcacatggtatgccataaataagtttgcaacttc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30731493 acctaaggaccgactaatccgatggagcaatcctttgtctatggttcaggagttgaagaggatgtttcacatggtatgctataaataagtttgcaacttc 30731592  T
Q  101 agtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30731593 agtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactaatctctgtgtgtagt 30731676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 30731961 - 30732028
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731961 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 30732028  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 8973280 - 8973332
Alignment:
Q  202 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||  | ||||  ||||||||||||||||||||||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggcctttt 8973332  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 9023415 - 9023467
Alignment:
Q  202 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||  | |||| ||| |||||||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggcctttt 9023467  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 8979311 - 8979342
Alignment:
Q  223 catctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||||||||||||||    
T  8979311 catctttcaactcatacctttctcggcctttt 8979342  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 9026775 - 9026806
Alignment:
Q  223 catctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||||||||||||||    
T  9026775 catctttcaactcatacctttctcggcctttt 9026806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 9032042 - 9032073
Alignment:
Q  223 catctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||||||||||||||    
T  9032042 catctttcaactcatacctttctcggcctttt 9032073  T

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Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 184
Target Start/End: Complemental strand, 14670330 - 14670148
Alignment:
Q  2 cctaaggaccgactaatccgatggagcgatcctttgtctattgttcaggagttgaagaggatgtttcacatggtatgccataaataagtttgcaacttca 101  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14670330 cctaaggaccgactaatccgatggagcaattctttgtctatggttcaggagttgaagaggatgtttcacatggtatgctataaataagtttgcaacttca 14670231  T
Q  102 gtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14670230 gtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 14670148  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 14676148 - 14676263
Alignment:
Q  63 tgtttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagac 162  Q
    ||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||     |||||||||| |||||||||||    
T  14676148 tgtttcatatggtatgc-ataaataaggttgcaacgtcagtgttgtgtatttggttttatagtagttataact-----catcaccttttggaaccaagac 14676241  T
Q  163 aagactgatctctgtgtgtagt 184  Q
    ||||||||||||||||||||||    
T  14676242 aagactgatctctgtgtgtagt 14676263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 14683266 - 14683381
Alignment:
Q  63 tgtttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttggtttaatagtagttataactcatcacatcacctttgggaaccaagac 162  Q
    ||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||     |||||||||| |||||||||||    
T  14683266 tgtttcatatggtatgc-ataaataaggttgcaacgtcagtgttgtgtatttggttttatagtagttataact-----catcaccttttggaaccaagac 14683359  T
Q  163 aagactgatctctgtgtgtagt 184  Q
    ||||||||||||||||||||||    
T  14683360 aagactgatctctgtgtgtagt 14683381  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 14669863 - 14669796
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669863 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 14669796  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 14706041 - 14706108
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14706041 ctgagaacgtttctgatataaaagcagcaccgagcccatctttcaactcatacctttctcggcctttt 14706108  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 14716244 - 14716311
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||    
T  14716244 ctgagaagatgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggcctttt 14716311  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 14654494 - 14654427
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||| |||||| |||||||||||||| |  | |||||||||||||||||||||||||||||||||    
T  14654494 ctgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggcctttt 14654427  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 14664285 - 14664218
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||| |||||| |||||||||||||| |  | |||||||||||||||||||||||||||||||||    
T  14664285 ctgagaaaatgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggcctttt 14664218  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 14674442 - 14674501
Alignment:
Q  195 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||    
T  14674442 atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcctttt 14674501  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 14679820 - 14679879
Alignment:
Q  195 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||    
T  14679820 atgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggcctttt 14679879  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 14681560 - 14681619
Alignment:
Q  195 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||||||    
T  14681560 atgtctgatataaaagcagcacctagcccatttttcaacttatacctttctcggcctttt 14681619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 14708532 - 14708598
Alignment:
Q  188 tgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||| ||||| ||||||||||||  |  |||||||||||||||||||||||||||||||||||||    
T  14708532 tgagaaaatgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggcctttt 14708598  T

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Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 14676585 - 14676652
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||| ||||||| ||||||||| ||| | || |||| ||||||||||||||||||||||||||||    
T  14676585 ctgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggcctttt 14676652  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 14683703 - 14683770
Alignment:
Q  187 ctgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||| ||||||| ||||||||| ||| | || |||| ||||||||||||||||||||||||||||    
T  14683703 ctgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggcctttt 14683770  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 28366338 - 28366286
Alignment:
Q  202 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||   ||| ||| ||||||||||||||||||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggcctttt 28366286  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 33988038 - 33988090
Alignment:
Q  202 atataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||  |  ||| |||||||||||||||||||||||||||||||||    
T  33988038 atataaaagcataagtgagtccatctttcaactcatacctttctcggcctttt 33988090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 14654040 - 14653974
Alignment:
Q  66 ttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttggtttaatagtagttataa 133  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| ||||| |||| ||||| |||||||    
T  14654040 ttcatatggtatgctataaataagtc-gcaacttcagtgttgtttatttagttttatagtggttataa 14653974  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 14663831 - 14663765
Alignment:
Q  66 ttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttggtttaatagtagttataa 133  Q
    |||| ||||||||| ||||||||||  |||||||||||||||| ||||| |||| ||||| |||||||    
T  14663831 ttcatatggtatgctataaataagtc-gcaacttcagtgttgtttatttagttttatagtggttataa 14663765  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 41841292 - 41841239
Alignment:
Q  201 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||||||| | | | ||||||||||||||||||||||||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggcctttt 41841239  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 44878950 - 44879003
Alignment:
Q  201 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||||||||    
T  44878950 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggcctttt 44879003  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 44880971 - 44880918
Alignment:
Q  201 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||||||||    
T  44880971 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggcctttt 44880918  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 10796031 - 10795977
Alignment:
Q  200 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||||||||    
T  10796031 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggcctttt 10795977  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 10791793 - 10791739
Alignment:
Q  200 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||| | | | | | ||||||||||||||||||||||||||||||    
T  10791793 tgatataaaagcagaagccaactcttctttcaactcatacctttctcggcctttt 10791739  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 50077340 - 50077286
Alignment:
Q  200 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||||||||    
T  50077340 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggcctttt 50077286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 49106670 - 49106616
Alignment:
Q  200 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||||||| | | ||||   |||||||||||||||||||||||||||||    
T  49106670 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggcctttt 49106616  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 49108774 - 49108720
Alignment:
Q  200 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcctttt 254  Q
    |||||||||| ||| | | |||| || ||||||||||||||||||||||||||||    
T  49108774 tgatataaaatcagaagccagcctatatttcaactcatacctttctcggcctttt 49108720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 254
Target Start/End: Complemental strand, 11652512 - 11652479
Alignment:
Q  221 cccatctttcaactcatacctttctcggcctttt 254  Q
    ||||||||| ||||||||||||||||||||||||    
T  11652512 cccatcttttaactcatacctttctcggcctttt 11652479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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