View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_48 (Length: 242)
Name: NF1681_low_48
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_48 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 107424 - 107645
Alignment:
| Q |
1 |
tgagcaattgaaggagagacataattgataatccatgaatggacaagattgttacacctctcccaagcatcataactaggatgaaaaggatcaggagccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
107424 |
tgagcaattgaaggagagacataattgataatccatgaatggacaagattgttacacctctcccaagcatcataactaggatgaaaaggatcaggagcca |
107523 |
T |
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| Q |
101 |
agatcaaaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggagtgaagagtttcgt |
200 |
Q |
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| T |
107524 |
agatcgaaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggagtgaagagtttcgt |
107623 |
T |
|
| Q |
201 |
aacgagagaaattgctggattt |
222 |
Q |
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||| |||||||||||||||||| |
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| T |
107624 |
aacaagagaaattgctggattt |
107645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21949330 - 21949108
Alignment:
| Q |
1 |
tgagcaattgaaggagagacataattgataatccatgaatggacaagattgttacacctctcccaagcatcataactaggatgaaaaggatcaggagccg |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||| ||||||||||||||| || ||| |
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| T |
21949330 |
tgagcaattgaaggagagacaaaattgataatccatgaatgtacaagatagttacatctctcccaagcatcgtaactcggatgaaaaggatcaagaaccg |
21949231 |
T |
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| Q |
101 |
agatcaaaccgtcgacgaacttgaatttgttctttccgatcaaagccatgtgcatcaatcatgaccatgaatggtaattgctgggag-tgaagagtttcg |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||| ||||||||||||||||| | |||||||||| |
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| T |
21949230 |
gaatcgaaccgtcgacgaacttgaatttgttctttccgatcaaagccttgcgcatcactcttgaccatggatggtaattgctgggagttaaagagtttcg |
21949131 |
T |
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| Q |
200 |
taacgagagaaattgctggattt |
222 |
Q |
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||||||||||| || |||||||| |
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| T |
21949130 |
taacgagagaactttctggattt |
21949108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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