View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_5 (Length: 505)
Name: NF1681_low_5
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 23 - 488
Target Start/End: Original strand, 10124714 - 10125179
Alignment:
| Q |
23 |
ggtggtggtggaggatgtgatggttgaggaatattcaaggttagtggcaatggttgttgtggaagtggtggaatatttgggtgggcaaacattctttgaa |
122 |
Q |
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| T |
10124714 |
ggtggtggaggaggatgtgatggttgaggaatattcaaggttaacggcaatggttgttgttgaagtggtggaatatttgggtgggcaaacattctttgaa |
10124813 |
T |
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| Q |
123 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttgtgaaagaaatcagagagaaaa |
222 |
Q |
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| T |
10124814 |
acggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttttgaaagaaatcagagagaaaa |
10124913 |
T |
|
| Q |
223 |
cgtagaatcaaaaggtttgttacgtgaaagaatgcataaattcaagggaatgagtaagactagggtatgacattggatagatatgagcaagactggtaac |
322 |
Q |
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| T |
10124914 |
cgtagaatcaaaaggtttgttacgtgaaataatgcataaattcaagggaatgagtaagactagggtctgacattggatagatatgagcaagactggtaac |
10125013 |
T |
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| Q |
323 |
aaaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccnnnnnnnnnnnntcatatgattaaatcaaatgcctttgaattaa |
422 |
Q |
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| T |
10125014 |
aaaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccaaaaagtaaaaatcatatgattaaatcaaatgcctttgaattaa |
10125113 |
T |
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| Q |
423 |
aagttgtccaagatcaaataccctaaataaaatctttgtaaaatatatttccgtgaaagatatttt |
488 |
Q |
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| T |
10125114 |
aagttgtccaagatcaaataacctaaataaatcttttgtaaaatatatttccgtgaaagatatttt |
10125179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 25043246 - 25043356
Alignment:
| Q |
87 |
gtggtggaatatttgggtgggcaaacattctttgaaacggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctcta |
186 |
Q |
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|||||||||| |||||||||| ||| || ||||||| | |||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||| |
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| T |
25043246 |
gtggtggaatttttgggtgggaaaatatgaattgaaacagcgttagcatcggaagaggaagactttgtatcggttgttcagagtcgttcatttttctctt |
25043345 |
T |
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| Q |
187 |
atgggttgtga |
197 |
Q |
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|||| |||||| |
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| T |
25043346 |
atggattgtga |
25043356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 25043422 - 25043466
Alignment:
| Q |
262 |
attcaagggaatgagtaagactagggtatgacattggatagatat |
306 |
Q |
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| T |
25043422 |
attcaagggaatgagtaagactgggatataacaatggatagatat |
25043466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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