View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_56 (Length: 236)
Name: NF1681_low_56
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 34993980 - 34993785
Alignment:
| Q |
15 |
gaagtaaattagatgaaagtactataaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataatcnnnn |
114 |
Q |
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| T |
34993980 |
gaagtaaattagatgaaagtactataaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataatctttt |
34993881 |
T |
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| Q |
115 |
nnnctttcttttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttgacagatattcacattttccttctcaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34993880 |
tttctttcttttaatagagatgctaatgtagatgaagatgcctattggaattgggagacttctcaagttgacagatattcacattttccttctcaa |
34993785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 17441317 - 17441257
Alignment:
| Q |
125 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
185 |
Q |
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| T |
17441317 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
17441257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 17441394 - 17441326
Alignment:
| Q |
40 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
108 |
Q |
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|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
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| T |
17441394 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
17441326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 3060883 - 3060943
Alignment:
| Q |
125 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
185 |
Q |
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| T |
3060883 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
3060943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 3060806 - 3060874
Alignment:
| Q |
40 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
108 |
Q |
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|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
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| T |
3060806 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
3060874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 4875526 - 4875586
Alignment:
| Q |
125 |
ttaatagagatgctaatgtagatgaagatgcctattggaattgagagacttctcaagttga |
185 |
Q |
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|||||||||||| ||| || ||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
4875526 |
ttaatagagatgttaaagtggatgaagatgcatattggaattgggagacctctcaagttga |
4875586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 4875449 - 4875517
Alignment:
| Q |
40 |
aaaatgaattttaataagctatagctcaaaatctaatgactattgtgtctatgaaatttattcaaataa |
108 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||| | |||| ||||||| |||| |||||||||| |
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| T |
4875449 |
aaaaggaattttaataggctatagctcaaagtctaagggctataaagtctatggaattgattcaaataa |
4875517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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