View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_57 (Length: 236)
Name: NF1681_low_57
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39062328 - 39062106
Alignment:
| Q |
1 |
tgttaaaattaaaaacaaaaccaaagacataatatgcaataagaatgatcatcacaattggaaacgaataagaatacaaatgttaagattgatgatataa |
100 |
Q |
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| T |
39062328 |
tgttaaaattaaaaacaaaaccaaagacataatatgcaataagaatgatcatcacaattggaaatgaataagaatacaaatgttaagattgatgatataa |
39062229 |
T |
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| Q |
101 |
gagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaatagatccaacttctatcatattcata--ta |
198 |
Q |
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| T |
39062228 |
gagataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaatagatccaacttctatcatattcatatata |
39062129 |
T |
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| Q |
199 |
tactaactaactaaaatgaatat |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
39062128 |
tactaactaactaaaatgaatat |
39062106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 36824461 - 36824534
Alignment:
| Q |
104 |
ataaaagcttaacaattgttgtattgagaagaatgagaaagatacaagtgaacaaattggttacaaatagatcc |
177 |
Q |
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|||||||||||| || |||||||||| || |||||||| |||| |||||||||| || |||| ||||| |||| |
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| T |
36824461 |
ataaaagcttaagaaatgttgtattggaaacaatgagaatgatagaagtgaacaagttagttataaataaatcc |
36824534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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