View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_60 (Length: 234)
Name: NF1681_low_60
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 37626097 - 37625892
Alignment:
| Q |
13 |
aagaatataatgtaccagaacatgtaggccagccattatgcctcagtaaacgaaattggagggatgtgccaaagaggtccagagaaaggtcccaatcaca |
112 |
Q |
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| T |
37626097 |
aagaatataatgtaccagaacatgtaggccagccattatgcctcagtaaacgaaattggagggatgtgccaaagaggtccagagaaaggtcccaatcaca |
37625998 |
T |
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| Q |
113 |
tatcctcccaagttgtatattgatctcatcttccaaatggtgaccaattcccagcccttggattgagtcaatcatcttcaatgctaccataggatcactt |
212 |
Q |
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| T |
37625997 |
tatcctcccaagttgtatattgatctcatcttccaaatggtgaccaattcccagcccttggattgagtcaatcatcttcaatgctaccataggatcactt |
37625898 |
T |
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| Q |
213 |
gagttt |
218 |
Q |
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|||||| |
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| T |
37625897 |
gagttt |
37625892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 37617004 - 37616806
Alignment:
| Q |
20 |
taatgtaccagaacatgtaggccagccattatgcctcagtaaacgaaattggagggatgtgccaaagaggtccagagaaaggtcccaatcacatatcctc |
119 |
Q |
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|||| ||||||||||||| | ||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
37617004 |
taatataccagaacatgtggtccagccattatgcctcagtaaccgaaattgaagggatgtggcaaagaggtcttgagaaaggtcccaatcacatatcctc |
37616905 |
T |
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| Q |
120 |
ccaagttgtatattgatctcatcttccaaatggtgaccaattcccagcccttggattgagtcaatcatcttcaatgctaccataggatcacttgagttt |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
37616904 |
ccaagttgtatattgatctcatcttccaaatgatgaccaattcccagccgttggattgagtcaatcatcttcaatgttacaataggatcatttgagttt |
37616806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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