View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_63 (Length: 234)
Name: NF1681_low_63
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 36354447 - 36354248
Alignment:
| Q |
11 |
cacagacacaaaccgaaactaatgcattctagttgnnnnnnncatccttgattttctcttcttcacacgttttggtcgacctcgac----agcattgtgg |
106 |
Q |
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| T |
36354447 |
cacagacacaaaccgaaactaatgcattctagttgtttttttcatccttgattttctcttcttcacacgttttggtcgacctcgacgtacagcattgtgg |
36354348 |
T |
|
| Q |
107 |
catcttcctattggacaaca-tttagattataacatttttatatccgcaatatccttccttcattaccaggaacattttcctaatctctggcaagataca |
205 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||| |||| |||||||||||| |
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| T |
36354347 |
catcctcctattggacaacactttagattataacatttttatatccgaaatatccttacttcattaacaggaacaatttccatatctatggcaagataca |
36354248 |
T |
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