View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_71 (Length: 227)
Name: NF1681_low_71
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 223
Target Start/End: Complemental strand, 25392727 - 25392608
Alignment:
| Q |
105 |
ctatccttttattccaacctcttagagcttgctttaatccatagagggctttccataattttaactctttagatttatga-ttttttaccttcaaatcct |
203 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||||| | |
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| T |
25392727 |
ctatccttttattccaagctcttagagcttgctttaatccatagagggctttccataatttatactctttagatttctgattttttttacttcaaatcgt |
25392628 |
T |
|
| Q |
204 |
agaggctgtgtcacaaaaac |
223 |
Q |
| |
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|||||||||||||||||||| |
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| T |
25392627 |
agaggctgtgtcacaaaaac |
25392608 |
T |
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