View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1681_low_77 (Length: 209)

Name: NF1681_low_77
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1681_low_77
NF1681_low_77
[»] chr2 (2 HSPs)
chr2 (11-193)||(29690780-29690962)
chr2 (11-193)||(12606527-12606710)
[»] chr7 (3 HSPs)
chr7 (11-193)||(24905317-24905500)
chr7 (12-110)||(14658600-14658698)
chr7 (80-127)||(35515861-35515909)
[»] chr5 (4 HSPs)
chr5 (11-193)||(32246563-32246746)
chr5 (11-100)||(17686466-17686554)
chr5 (43-124)||(804680-804762)
chr5 (73-122)||(34177439-34177489)
[»] chr1 (2 HSPs)
chr1 (11-193)||(42785499-42785682)
chr1 (81-127)||(2654043-2654090)
[»] chr4 (3 HSPs)
chr4 (11-193)||(32807682-32807865)
chr4 (81-127)||(45637162-45637209)
chr4 (80-127)||(8813770-8813818)
[»] chr6 (1 HSPs)
chr6 (78-110)||(17293082-17293114)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 29690962 - 29690780
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc 110  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690962 catcacaaggcataacagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc 29690863  T
Q  111 acctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
    ||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29690862 acctccttacagcctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 29690780  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 12606710 - 12606527
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- 109  Q
    ||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||     
T  12606710 catcacaaggcataacagtagatacaccaatccacctaaagatgtgattccaaacagccccaaaaacattacaatgtaataataaatgagcagatgtttc 12606611  T
Q  110 cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
    |||||||||||||||||| ||||| || ||  |||  |||| || |||||||||| | |||| |||||||||||||| ||||||    
T  12606610 cacctccccacaacctccaacgcataactgtgcattgatgctaatcacattacgatgataaaggttgtccttagtagacaacct 12606527  T

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Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 24905317 - 24905500
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- 109  Q
    |||||| |||||||| ||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  24905317 catcaccaggcataacagtagaaacaccaatccacctagagatgtgattccaaacagccccgaaaacattacaatgtaataataagtgagaagatgtttc 24905416  T
Q  110 cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  24905417 cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacatgacgacggtaaatgttgtccttagtaggcaacct 24905500  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 14658600 - 14658698
Alignment:
Q  12 atcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc 110  Q
    |||| ||||||||| |||||||||| | |||||| |||| ||||||||||||||| || | |||||||||||||||||||||||||||| | |||||||    
T  14658600 atcataaggcataagagtagcaacatcaatccacgtaaaaatgtgattccaaacatccccaaaaacattacaatgtaataataagtgagcacatgtttc 14658698  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 35515909 - 35515861
Alignment:
Q  80 tacaatgtaataataagtgagaagatgttt-cacctccccacaacctcc 127  Q
    |||||||||| || | |||||||||||||| ||||||||||||||||||    
T  35515909 tacaatgtaaaaaaaggtgagaagatgtttccacctccccacaacctcc 35515861  T

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Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 32246746 - 32246563
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- 109  Q
    ||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||     
T  32246746 catcagaaggcataacagtagtaaaaccaatccacctaaagatgtgattccaaacagccccgaaaacattacaatgtaataataagtgagaggatgtttc 32246647  T
Q  110 cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
    |||||||||||||||||| |||||||| |||||||||||| ||||||| ||||| |  |||| |||||||||||||||||||||    
T  32246646 cacctccccacaacctccaacgcaaaactgatcatcaatgtcaaccacgttacggcaataaaggttgtccttagtaggcaacct 32246563  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 17686554 - 17686466
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgag 100  Q
    ||||| ||||||||| | |||||||||| ||||||||||| || |||||||||||| || | ||||||||||||||||||||||||||||    
T  17686554 catcataaggcataagaatagcaacaccaatccacctaaaaatatgattccaaacatcc-caaaaacattacaatgtaataataagtgag 17686466  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 804680 - 804762
Alignment:
Q  43 cacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagat-gtttcacctccccacaacc 124  Q
    |||||||| || |||| |||||||| | | |||| |||||||||||||||||| |||||||||  ||||||||||||||||||    
T  804680 cacctaaaaatatgatgccaaacagtcccaaaaaaattacaatgtaataataaatgagaagatattttcacctccccacaacc 804762  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 34177489 - 34177439
Alignment:
Q  73 aaaacattacaatgtaataataagtgagaagatgttt-cacctccccacaa 122  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  34177489 aaaaaattacaatgaaataataagtgagaagatgtttccacctccccacaa 34177439  T

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Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 42785682 - 42785499
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgtttc 110  Q
    ||||||||||||||| |||||||||| | |||||| |    || || ||||||||||   | |||| ||||||||| || ||||||||||||||||||||    
T  42785682 catcacaaggcataacagtagcaacatcaatccacttgtgaatatggttccaaacagatccaaaaatattacaatgaaaaaataagtgagaagatgtttc 42785583  T
Q  111 -acctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
     ||||||||||||||||| ||||| |  ||||||||||  |||||||||||||| || |||| ||||||||||||| |||||||    
T  42785582 cacctccccacaacctccaacgcacagctgatcatcaacaccaaccacattacgtcggtaaaggttgtccttagtacgcaacct 42785499  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 2654043 - 2654090
Alignment:
Q  81 acaatgtaataataagtgagaagatgttt-cacctccccacaacctcc 127  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||    
T  2654043 acaatgtaataataagtgtgaagatgtttccacctccccacaccctcc 2654090  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 32807682 - 32807865
Alignment:
Q  11 catcacaaggcataatagtagcaacaccgatccacctaaagatgtgattccaaacagccgcgaaaacattacaatgtaataataagtgagaagatgttt- 109  Q
    ||||||||||||||| ||||| |||| | ||||||||    || || |||||||||| | | ||||||||||||||||| |||||||||||| ||||||     
T  32807682 catcacaaggcataacagtagaaacatcaatccacctgtgaatatggttccaaacagacccaaaaacattacaatgtaaaaataagtgagaatatgtttc 32807781  T
Q  110 cacctccccacaacctcccacgcaaaattgatcatcaatgccaaccacattacgacgttaaatgttgtccttagtaggcaacct 193  Q
    ||||||| || ||||||| || || ||  | | || ||  ||||||||| ||||||| |||| ||||||||| |||||||||||    
T  32807782 cacctcctcataacctccaacacagaaccggttattaacaccaaccacagtacgacggtaaaggttgtcctttgtaggcaacct 32807865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 45637209 - 45637162
Alignment:
Q  81 acaatgtaataataagtgagaagatgttt-cacctccccacaacctcc 127  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||    
T  45637209 acaatgtaataataagtgtgaagatgtttccacctccccacaccctcc 45637162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 8813818 - 8813770
Alignment:
Q  80 tacaatgtaataataagtgagaagatg-tttcacctccccacaacctcc 127  Q
    ||||||||||||||||||| ||||||| ||| ||||||||||| |||||    
T  8813818 tacaatgtaataataagtgtgaagatgtttttacctccccacaccctcc 8813770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 17293082 - 17293114
Alignment:
Q  78 attacaatgtaataataagtgagaagatgtttc 110  Q
    ||||||||||||||||||||||||||| |||||    
T  17293082 attacaatgtaataataagtgagaagaagtttc 17293114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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