View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_8 (Length: 430)
Name: NF1681_low_8
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 416
Target Start/End: Complemental strand, 50094457 - 50094056
Alignment:
| Q |
21 |
gtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatccatttcctcccaagagggcaggctcac |
120 |
Q |
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| T |
50094457 |
gtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatccatttcctcccaagagggcaggctcac |
50094358 |
T |
|
| Q |
121 |
ttacaccagtttgtgtaagacttttagaaggt---tcatatttatttggtttacttgtgtctggtcatcatggaattaaacagccgtataagaaggagga |
217 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
50094357 |
ttataccagtttgtgtaagacttttagaaggtggttcatatttatttggtttacctgtgtttggtcatcatgaaattaaacagccgtataagaaggagga |
50094258 |
T |
|
| Q |
218 |
tccaaactacatggtcat---ttctcatttgaaaatttataaccttccagtatttcgatttcatctttatgactgaattcactaaactaacaacatacaa |
314 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50094257 |
tccaaactacatggttatgatttctcatttgaaaatttataaccttccagtatttcgatttcttctttatgactgaattcactaaactaacaacatacaa |
50094158 |
T |
|
| Q |
315 |
ataacagtgtaaggaagagaggggttgggtagctcaaccggttcaagctaagggaaacaaacaaatattgcatcgcgataatttattgctgcatatgtta |
414 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50094157 |
ataacagagtaaggaagagaggggttgggtagctcaaccggttcaagctaagggaaacaaacaaatattgcatcgcgataatttattgctgcatatgtta |
50094058 |
T |
|
| Q |
415 |
at |
416 |
Q |
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|| |
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| T |
50094057 |
at |
50094056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 35498038 - 35498120
Alignment:
| Q |
11 |
catcatcaaagtgtcaggaataccaaagaattaaagagtaaaggcaaggcatcgcaagataataaaggaaaataaaacaaatc |
93 |
Q |
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|||||| || ||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||||||| |||||||||||| |
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| T |
35498038 |
catcattaaggtgtcaggaataccaaagatgtaaagagtagaggtgaggcatcacaagataataaaggaacataaaacaaatc |
35498120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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