View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681_low_80 (Length: 205)
Name: NF1681_low_80
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681_low_80 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 1881 - 2060
Alignment:
| Q |
13 |
gattatacttaccctgtagtttactaaaattaaaagtcagctcacattagaacaaatcctacttcttatacaattttattatagtcacgttatgaatcac |
112 |
Q |
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| T |
1881 |
gattatacttaccctgtagtttactaaaattaaaagtcagctcacattagaacaaatcctacttcttatacaattttattatagtcacgttatgaatcac |
1980 |
T |
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| Q |
113 |
attccatttgtcattg------atatatatgcaaacttgtcccaagctgaggtcctaacatgcagtccacatttgagacc |
186 |
Q |
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| T |
1981 |
attccatttgtcattgatatatatatatatgcaaacttgtcccaagctgaggtcctaacatgcagtccacatttgagacc |
2060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 33 - 166
Target Start/End: Original strand, 21308277 - 21308406
Alignment:
| Q |
33 |
ttactaaaattaaaagtcagctcacattagaacaaatcctacttcttatacaattttattatagtcacgttatgaatcacattccatttgtcattgatat |
132 |
Q |
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| T |
21308277 |
ttactaatattaaaattcagctcacattagaacaaagcatacttcgtatacaattttattatagtcacctcataaatcacattccatttgccattgatag |
21308376 |
T |
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| Q |
133 |
atatgcaaacttgtcccaagctgaggtcctaaca |
166 |
Q |
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| T |
21308377 |
----gcaaacttgtcccaacctgaagttctaaca |
21308406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 21135852 - 21135906
Alignment:
| Q |
104 |
atgaatcacattccatttgtcattgatatatatgcaaacttgtcccaagctgaggtcct |
162 |
Q |
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| T |
21135852 |
atgaatcacattcaatttgccatt----tatatgcaaacttgtcccaacctgaggtcct |
21135906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 21146357 - 21146415
Alignment:
| Q |
104 |
atgaatcacattccatttgtcattgatatatatgcaaacttgtcccaagctgaggtcctaaca |
166 |
Q |
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| T |
21146357 |
atgaatcacattccatttgccattgatata----caaacttgtcccaaccagaggttctaaca |
21146415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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